PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold10144-snap-gene-0.8-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 322aa MW: 35714.7 Da PI: 7.221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd llv +++++G+g+W++++ g+ R+ k+c++rw +yl maker-scaffold10144-snap-gene-0.8-mRNA-1 14 KGPWTPEEDILLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l maker-scaffold10144-snap-gene-0.8-mRNA-1 67 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.907 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.15E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.057 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.2E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.45E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0042761 | Biological Process | very long-chain fatty acid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRPPCCDKE GVKKGPWTPE EDILLVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIRRGNF TDHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKIQ 120 SGAEGHSKDG FSSPSQSLTR GQWERRLQTD IHMAKQALSE ALSPEKLSNS GLSELKPSTG 180 CLSNTKPAAH SSTYASSTEN IARLLKGWVR NSPKSARSNS AITQNSLNNM SGTDSVSSEG 240 TPSKANNGIE QSETFESLLG FESFDSSHSD TSQSMSPEAS LFQDESKPLP LSLLENWLFD 300 EGVSQGKEFL SDFSLDDNAN FF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 14 | 116 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00386 | DAP | Transfer from AT3G28910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229570 | 1e-118 | KP229570.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB14) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023910525.1 | 0.0 | myb-related protein 306-like | ||||
Swissprot | P81392 | 1e-119 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | A0A2N9FVI2 | 0.0 | A0A2N9FVI2_FAGSY; Uncharacterized protein | ||||
STRING | VIT_14s0108g00830.t01 | 1e-167 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28910.1 | 1e-116 | myb domain protein 30 |
Publications ? help Back to Top | |||
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