PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold10113-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 507aa    MW: 55899.5 Da    PI: 6.0627
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold10113-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.79.3e-11226282155
                                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                   s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  maker-scaffold10113-augustus-gene-0.5-mRNA-1 226 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 282
                                                   57*******************4444.2344336655.7799999*************98 PP
2AP250.55e-16325376155
                                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                                   s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  maker-scaffold10113-augustus-gene-0.5-mRNA-1 325 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 376
                                                   57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-14226292IPR016177DNA-binding domain
CDDcd000182.86E-19226292No hitNo description
PfamPF008471.7E-8226282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-12227291IPR001471AP2/ERF domain
SMARTSM003809.8E-22227296IPR001471AP2/ERF domain
PROSITE profilePS5103217.346227290IPR001471AP2/ERF domain
PRINTSPR003671.6E-6228239IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-18325385IPR016177DNA-binding domain
PfamPF008472.6E-10325376IPR001471AP2/ERF domain
CDDcd000183.88E-12325384No hitNo description
Gene3DG3DSA:3.30.730.101.2E-18326384IPR001471AP2/ERF domain
SMARTSM003806.0E-31326390IPR001471AP2/ERF domain
PROSITE profilePS5103219.164326384IPR001471AP2/ERF domain
PRINTSPR003671.6E-6366386IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MGPSTNWLSF SLSPMEMLRS SESQFMSYEN SSTDSPHYLI DNFYTNGWAN QNEVKEGEAQ  60
NLGDSSFLTS LIDPQIQNQQ VIPKLEDFLG DSSSMVRYSD SQTETQDSSL TQIYDQGSAY  120
FNEPQDLKTI TGFQAFSTNS GSEVDDSASI ARTQLACAEF GGQSIESAGT ELGFSNCANV  180
TGGALSLGVA QTQTQTPTES SEQKPIVSVE SDGTKKIADT FGQRTSIYRG VTRHRWTGRY  240
EAHLWDNSCR REGQARKGRQ GGYDKEDKAA RAYDLAALKY WGPTATTNFP VSNYTKELEE  300
MKHVTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  360
EEAAEAYDIA AIKFRGANAV TNFEMNRYDV EAIAKSSLPI GGAAKRLKLS LESEQKPVIT  420
HNQQPQSSSA SNSSINFAAI QSLPAIPCGI PMDASTAALY HHNLFQHFQS NNIIGTSNSP  480
GSSSIATPMN IYHHPQAEYF LWPHQPY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023906528.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2N9EF820.0A0A2N9EF82_FAGSY; Uncharacterized protein
STRINGEOX919250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]