PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold09973-snap-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 240aa MW: 28348.6 Da PI: 10.1031

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold09973-snap-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.6	3.8e-43	60	185	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkky 68 ppGfrF+Ptd +lv++yL +kv +++l+ + i +v++y++ P+ L +++k+ ++++wyfF++r++ky maker-scaffold09973-snap-gene-0.10-mRNA-1 60 PPGFRFSPTDIDLVMHYLIRKVLNHPLPW-NRIVDVQLYDHSPEWLAEEYKQyGQNKWYFFTPRERKY 126 8**************************.77**********8544443888******** PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++gk++nra+ +gyWkatg+d++++ k+ +vg kk L+fy+g+apkg kt+W+m+eyr+ maker-scaffold09973-snap-gene-0.10-mRNA-1 127 RNGKHPNRAAGDGYWKATGTDTAIKF-KELVVGYKKKLIFYRGKAPKGDKTNWIMNEYRI 185 *********************9.8999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-52	48	211	IPR003441	NAC domain
PROSITE profile	PS51005	48.314	59	211	IPR003441	NAC domain
Pfam	PF02365	1.5E-23	60	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSMKEKVVDQ ARRLIGSCMN IELVILIWIN GLCVGFIIRG NQARHKLKRE YHSLEYVKPP 60 PGFRFSPTDI DLVMHYLIRK VLNHPLPWNR IVDVQLYDHS PEWLAEEYKQ YGQNKWYFFT 120 PRERKYRNGK HPNRAAGDGY WKATGTDTAI KFKELVVGYK KKLIFYRGKA PKGDKTNWIM 180 NEYRINHPPV TNTSESDMRL DKWVLCMIYQ KNESKSSETH TQKAYPTSSH ANDRNEPLKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-51	43	214	1	168	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-51	43	214	1	168	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-51	43	214	1	168	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-51	43	214	1	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-50	49	214	10	171	NAC domain-containing protein 19
3swm_B	1e-50	49	214	10	171	NAC domain-containing protein 19
3swm_C	1e-50	49	214	10	171	NAC domain-containing protein 19
3swm_D	1e-50	49	214	10	171	NAC domain-containing protein 19
3swp_A	1e-50	49	214	10	171	NAC domain-containing protein 19
3swp_B	1e-50	49	214	10	171	NAC domain-containing protein 19
3swp_C	1e-50	49	214	10	171	NAC domain-containing protein 19
3swp_D	1e-50	49	214	10	171	NAC domain-containing protein 19
4dul_A	9e-51	43	214	1	168	NAC domain-containing protein 19
4dul_B	9e-51	43	214	1	168	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912168.1	1e-133	NAC transcription factor 25-like
TrEMBL	A0A2N9GNT0	1e-77	A0A2N9GNT0_FAGSY; Uncharacterized protein
STRING	EOY32709	2e-68	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	8e-53	NAC domain containing protein 3