![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold09973-snap-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 28348.6 Da PI: 10.1031 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 138.6 | 3.8e-43 | 60 | 185 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkky 68 ppGfrF+Ptd +lv++yL +kv +++l+ + i +v++y++ P+ L +++k+ ++++wyfF++r++ky maker-scaffold09973-snap-gene-0.10-mRNA-1 60 PPGFRFSPTDIDLVMHYLIRKVLNHPLPW-NRIVDVQLYDHSPEWLAEEYKQyGQNKWYFFTPRERKY 126 8****************************.77**************8544443888************ PP NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++gk++nra+ +gyWkatg+d++++ k+ +vg kk L+fy+g+apkg kt+W+m+eyr+ maker-scaffold09973-snap-gene-0.10-mRNA-1 127 RNGKHPNRAAGDGYWKATGTDTAIKF-KELVVGYKKKLIFYRGKAPKGDKTNWIMNEYRI 185 *************************9.8999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-52 | 48 | 211 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.314 | 59 | 211 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-23 | 60 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MSMKEKVVDQ ARRLIGSCMN IELVILIWIN GLCVGFIIRG NQARHKLKRE YHSLEYVKPP 60 PGFRFSPTDI DLVMHYLIRK VLNHPLPWNR IVDVQLYDHS PEWLAEEYKQ YGQNKWYFFT 120 PRERKYRNGK HPNRAAGDGY WKATGTDTAI KFKELVVGYK KKLIFYRGKA PKGDKTNWIM 180 NEYRINHPPV TNTSESDMRL DKWVLCMIYQ KNESKSSETH TQKAYPTSSH ANDRNEPLKN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 43 | 214 | 1 | 168 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 43 | 214 | 1 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912168.1 | 1e-133 | NAC transcription factor 25-like | ||||
TrEMBL | A0A2N9GNT0 | 1e-77 | A0A2N9GNT0_FAGSY; Uncharacterized protein | ||||
STRING | EOY32709 | 2e-68 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10112 | 16 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15500.1 | 8e-53 | NAC domain containing protein 3 |