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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
maker-scaffold09973-snap-gene-0.10-mRNA-1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
NAC |
| Protein Properties |
Length: 240aa MW: 28348.6 Da PI: 10.1031 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold09973-snap-gene-0.10-mRNA-1 | genome | THGP | View Nucleic Acid |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 138.6 | 3.8e-43 | 60 | 185 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkky 68
ppGfrF+Ptd +lv++yL +kv +++l+ + i +v++y++ P+ L +++k+ ++++wyfF++r++ky
maker-scaffold09973-snap-gene-0.10-mRNA-1 60 PPGFRFSPTDIDLVMHYLIRKVLNHPLPW-NRIVDVQLYDHSPEWLAEEYKQyGQNKWYFFTPRERKY 126
8****************************.77**************8544443888************ PP
NAM 69 atgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
++gk++nra+ +gyWkatg+d++++ k+ +vg kk L+fy+g+apkg kt+W+m+eyr+
maker-scaffold09973-snap-gene-0.10-mRNA-1 127 RNGKHPNRAAGDGYWKATGTDTAIKF-KELVVGYKKKLIFYRGKAPKGDKTNWIMNEYRI 185
*************************9.8999***************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MSMKEKVVDQ ARRLIGSCMN IELVILIWIN GLCVGFIIRG NQARHKLKRE YHSLEYVKPP 60
PGFRFSPTDI DLVMHYLIRK VLNHPLPWNR IVDVQLYDHS PEWLAEEYKQ YGQNKWYFFT 120
PRERKYRNGK HPNRAAGDGY WKATGTDTAI KFKELVVGYK KKLIFYRGKA PKGDKTNWIM 180
NEYRINHPPV TNTSESDMRL DKWVLCMIYQ KNESKSSETH TQKAYPTSSH ANDRNEPLKN
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 9e-51 | 43 | 214 | 1 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 1e-50 | 49 | 214 | 10 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 9e-51 | 43 | 214 | 1 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 9e-51 | 43 | 214 | 1 | 168 | NAC domain-containing protein 19 |
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