PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09884-augustus-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 356aa    MW: 40143.5 Da    PI: 9.2114
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09884-augustus-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.14.1e-2582125144
                                           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                                   d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  maker-scaffold09884-augustus-gene-0.5-mRNA-1  82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 125
                                                   79***************************************998 PP
2QLQ59.59.7e-211651136
                                           QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                                                  s+FTa+Q+q+L++Q+l++Ky++a+ P+Pp+Ll  ++
  maker-scaffold09884-augustus-gene-0.5-mRNA-1 16 SPFTATQWQELEHQALIFKYMVAGTPIPPDLLYSVK 51
                                                  89*****************************97775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009519.4E-121652IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.0911752IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-151750IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32582126IPR014977WRC domain
PfamPF088793.3E-2183125IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMTTSASASA SPRNRSPFTA TQWQELEHQA LIFKYMVAGT PIPPDLLYSV KRSLDSSISS  60
RLFPHHPIGW GCFEMGFGRK VDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS  120
RKPVEVTSTA TTTTATTTNT TTNNLSPPIP SINRNLSINT PTTIPTTTTT TPTNSSFSVS  180
PLSDTYPQHH PYHDSTAYPF LYSHSSSSRQ PLSGFLPQNN TTHQLFLDSG SYSQADKDYR  240
YLHGAREGVD ERAFFPEASG SARNLPDSYQ RLTMGPYKAY SHTQFQSLTD SSKHQQQQQD  300
QHCFVLGTDF KSPGQVKAEK KPEIHKPMHQ FFGEWPPKNT DTWLDLASNS RIPADD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860728.11e-179PREDICTED: growth-regulating factor 5-like isoform X2
TrEMBLA0A2N9FDP30.0A0A2N9FDP3_FAGSY; Uncharacterized protein
STRINGXP_007135443.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-65growth-regulating factor 5