PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09435-augustus-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 811aa    MW: 89778.7 Da    PI: 5.2628
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09435-augustus-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.62.9e-2086141156
                                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                   +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  maker-scaffold09435-augustus-gene-0.3-mRNA-1  86 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 141
                                                   688899***********************************************998 PP
2START161.75.6e-512875122206
                                                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEEC CS
                                         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgv 53 
                                                   la +  +elvk+ + +ep+W +    eng evl  +e ++              +++ea+r+s+v
  maker-scaffold09435-augustus-gene-0.3-mRNA-1 287 LAASSINELVKMCQGTEPLWIRNN--ENGREVLNLEEHARMfpwpmnlkqnsneFRTEASRDSAV 349
                                                   678899****************99..**********99888************************ PP

                                                   CSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.E CS
                                         START  54 vdmvlallveellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.R 107
                                                   v+m++ +lv  +ld + +W e ++    +a+t++v+s+g      g  qlm+aelq+lsplvp R
  maker-scaffold09435-augustus-gene-0.3-mRNA-1 350 VIMNSINLVDAFLDAN-KWVELFPsivsRAKTVQVLSPGdssqasGSFQLMYAELQVLSPLVPtR 413
                                                   ****************.************************************************ PP

                                                   EEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                                         START 108 dfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                                                   ++ f+R+++q  ++g+w+ivd  +ds  ++  ++s+ R ++ pSg+li++++ng+s+vtwveh++
  maker-scaffold09435-augustus-gene-0.3-mRNA-1 414 EVHFLRFCQQnAEEGTWAIVDFPIDSFHDNL-QPSFPRYKRWPSGCLIQDMPNGYSRVTWVEHAE 477
                                                   *****************************98.9******************************** PP

                                                   --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                                         START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                                   ++++ +h+++   v +g+a+ga++w+a lqrqce+
  maker-scaffold09435-augustus-gene-0.3-mRNA-1 478 VEEKPVHQIFSDYVCNGMAFGAQRWLAVLQRQCER 512
                                                   *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-1978144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-2179149IPR009057Homeodomain-like
PROSITE profilePS5007117.00683143IPR001356Homeobox domain
SMARTSM003892.5E-1984147IPR001356Homeobox domain
CDDcd000867.41E-1986144No hitNo description
PfamPF000468.7E-1886141IPR001356Homeobox domain
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PROSITE profilePS5084846.534277515IPR002913START domain
SuperFamilySSF559616.69E-33278514No hitNo description
CDDcd088751.35E-119281511No hitNo description
SMARTSM002343.6E-34286512IPR002913START domain
PfamPF018521.1E-43287512IPR002913START domain
SuperFamilySSF559613.16E-17530709No hitNo description
SuperFamilySSF559613.16E-17739777No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MYGDCQVMST MGGNVVSTET LFSSPPIQNS NFNFMSSMPF QPFPSMIAKE ENGFLGGKDE  60
MESGSGSEQV EEKSANEQES EQPPKKKRYH RHTARQIQEM EALFKECPHP DDKQRLKLSQ  120
ELGLKPRQVK FWFQNRRTQM KAQQDRSDNA ILKAENENLR SENYRLQHAL RNVVCPNCGG  180
PCLIGGEMGL DEQQIHLENA RLRDELERVC CIASRYAGRP IEVMSPAAPH LMAPSLDLDM  240
NIYSRHFPDP MASCTEMIPV PMLPPETSHF PDGGLLLEEE KSIALELAAS SINELVKMCQ  300
GTEPLWIRNN ENGREVLNLE EHARMFPWPM NLKQNSNEFR TEASRDSAVV IMNSINLVDA  360
FLDANKWVEL FPSIVSRAKT VQVLSPGDSS QASGSFQLMY AELQVLSPLV PTREVHFLRF  420
CQQNAEEGTW AIVDFPIDSF HDNLQPSFPR YKRWPSGCLI QDMPNGYSRV TWVEHAEVEE  480
KPVHQIFSDY VCNGMAFGAQ RWLAVLQRQC ERFASLMARN ISDLGVLPSP EARKNLMKLA  540
QRMIRSFCVN ISSSSGLMWT ALSDSPDDTV RITTRKISEP GQPNGLILCA VSTTWLPYPH  600
GHVFDLLRDE RRRSQLEVLS NGNSLHEVAH IANGSHPGNC ISLLRINVAS NSSQHVELML  660
QESCTDQSGS LVVYTTVDVD SIQLAMSSED PSCIPLLPIG FVIIPVGSTT NITNTASGDG  720
NSMPSSEDGN VSTTPSPAGC LLTVVLQVVS STIPSAKLSL SSVTAINNHL CNTVHQINAA  780
LSSGSTTTSC PDNVSVVGSC TETTIAPPPK Q
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2297155e-53KP229715.1 UNVERIFIED: Boehmeria nivea Homeobox-leucine zipper protein-like (HDZIP16) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898631.10.0homeobox-leucine zipper protein HDG5-like
RefseqXP_023898633.10.0homeobox-leucine zipper protein HDG5-like
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A2N9GWN30.0A0A2N9GWN3_FAGSY; Uncharacterized protein
STRINGVIT_02s0012g02030.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]