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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold09384-augustus-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | C2H2 | ||||||||
Protein Properties | Length: 208aa MW: 23913.4 Da PI: 10.1955 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 9.8e-06 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H maker-scaffold09384-augustus-gene-0.5-mRNA-1 95 FICEICNKGFQRDQNLQLHRRGH 117 89*******************88 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 171 | 193 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ maker-scaffold09384-augustus-gene-0.5-mRNA-1 171 WKCDKCSKRYAVQSDWKAHSKTC 193 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.05E-7 | 94 | 117 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-6 | 94 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.022 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.9E-5 | 95 | 117 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 136 | 166 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.0E-5 | 159 | 192 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.05E-7 | 166 | 191 | No hit | No description |
SMART | SM00355 | 140 | 171 | 191 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MMKGLMFQVQ QQQQQLKQQV VEENMSNLTS ASGEASVSSG NRTEIGNNYS QQYFAPPPTQ 60 TQPVMKKKRN LPGNPDPEAE VISLSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP 120 WKLKQRTSKE IRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY 180 AVQSDWKAHS KTCGTREYRC DCGTLFSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-22 | 167 | 208 | 3 | 44 | Zinc finger protein JACKDAW |
5b3h_F | 2e-22 | 167 | 208 | 3 | 44 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 133 | KLKQRTSKEIRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM465183 | 1e-145 | AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023882792.1 | 1e-153 | protein indeterminate-domain 7 isoform X2 | ||||
Swissprot | Q9LRW7 | 1e-107 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A2I4H050 | 1e-137 | A0A2I4H050_JUGRE; protein indeterminate-domain 7-like isoform X1 | ||||
STRING | XP_008228284.1 | 1e-133 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 1e-108 | indeterminate(ID)-domain 11 |
Publications ? help Back to Top | |||
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