PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold09202-snap-gene-0.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 676aa MW: 74988.5 Da PI: 9.2684 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 579 | 628 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ maker-scaffold09202-snap-gene-0.11-mRNA-1 579 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 628 678999********************9988889**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.287 | 574 | 633 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-7 | 578 | 631 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-10 | 579 | 629 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.42E-15 | 580 | 661 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 5.81E-17 | 580 | 630 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MVLQRRLEYG FDGFQVPVVP RASRSVRGRG PIRKKCDDNQ IHAFEILASV AGNILQESES 60 SVQSNAAGVK DQNHIFYTNS KGEREDEGRS IKKDPCEGGS FDEKSFACVP GFQGHHKSYK 120 LNEFCQAHDN ISHKVGSASN AYDHSEVTCS AEKLATISRK NNCGYSSSRV VGGPPYFGDV 180 YEGKVGAILE SKLEDGPYRS RRGIDQSLTV AGCSEDQMEL EREPLALVDS ESDVKVTLSR 240 DCVNFVPFPR HFDNIKVVNR DDDENSVGCT QTSTITKAYR SPPDIQQRRM KKLFPSRHWR 300 KSQKLKGRDG KKNPIYCNGR NFHIDERSQN IYPFKKRKFF NQSPISASDG GLHHEGIINF 360 PNKRINGDNH SAAFGASSSV ASQQVPHESK GCDVKFSIKS FKVPELFIEI PATATVGSLK 420 RTVMEAVTAV LGDGLHVGIL LQGKEIRDDN KSLLQTGISQ VQKRHSLGFI LEPGHTQITP 480 PACTEHPSME SGGKPRRHLA PLTLQPGASY ASPDRQLLSL GGSVERDLNI VPSLADSSTG 540 NAMPEAQALV AVPATSMEPL AVVPFDQKSH PEFVRRRIRR PFSVSEVEAL VQAVEKLGTG 600 RWRDVKLRAF DSAKHRTYVD LKDKWKTLVH TARISPHQRR GEPVPQELLD RVLAAHAYWS 660 QHQARQQLKT AEALCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 6e-51 | 564 | 674 | 1 | 112 | Telomere binding protein TBP1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023889881.1 | 0.0 | telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A2N9J277 | 0.0 | A0A2N9J277_FAGSY; Uncharacterized protein | ||||
STRING | XP_009341748.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13188 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 1e-104 | TRF-like 2 |