PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09092-augustus-gene-0.2-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 161aa    MW: 18298.7 Da    PI: 8.4835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09092-augustus-gene-0.2-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.6e-18753252
                                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52
                                                  +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ 
  maker-scaffold09092-augustus-gene-0.2-mRNA-1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARL 53
                                                  69******9.**********8.....334*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.00E-35666No hitNo description
Gene3DG3DSA:3.30.730.102.8E-34764IPR001471AP2/ERF domain
PfamPF008473.6E-11752IPR001471AP2/ERF domain
PROSITE profilePS5103221.167764IPR001471AP2/ERF domain
SMARTSM003803.3E-40770IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-21766IPR016177DNA-binding domain
PRINTSPR003672.4E-11819IPR001471AP2/ERF domain
PRINTSPR003672.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MARAQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLICGPKAR  60
TNFPYNPNAP LNKLLSATLT AKLHKCHFAS LQMAKKPVQK EPQFTVSSHQ SSGQTGFVEG  120
QVESSTNNQQ FLPLEDDHIE QMIEELLYYG SIEVCNVNVP T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-17869668ATERF1
3gcc_A9e-17869668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927831e-56BT092783.1 Soybean clone JCVI-FLGm-11B8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896289.17e-89ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-71ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A2N9IFX06e-95A0A2N9IFX0_FAGSY; Uncharacterized protein
STRINGXP_008377674.11e-79(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-62ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]