PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold08965-augustus-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Dof

Protein Properties

Length: 330aa MW: 35832.5 Da PI: 8.3887

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold08965-augustus-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4e-39	27	87	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ maker-scaffold08965-augustus-gene-0.2-mRNA-1 27 QQQALRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 87 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.8E-33	29	85	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-28	30	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.46	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MLSKSNCEKM VVITPTTNEW PQQQQQQQQA LRCPRCDSSN TKFCYYNNYS LSQPRHFCKA 60 CKRYWTRGGT LRNVPVGGGC RKNKRVKRPS SASAIDGASS STTPSANTIP PSQPHLDISS 120 STSNHHLNPL FFGLSSNPSD VSLPFPTRFN SRVSNVETVS GYDLQPQLNA LGLGFSSGIL 180 ANDASENDYR NGFNPSSTSN SLLSNYSIFG SSSSTATTSP TIASLLSSNF QQQKLMNGAM 240 KDNRAPNHYQ SLAPFEGLHI ASNSAEAAGI GIKEVKVEDG NSRLDWNNGS CQNNHMEQVG 300 LSDPSLYWNA TNMGAWNDPG NIESSVTSLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023922037.1	0.0	dof zinc finger protein DOF1.4-like
TrEMBL	A0A2N9ENH8	1e-177	A0A2N9ENH8_FAGSY; Uncharacterized protein
STRING	EOY28202	1e-142	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	4e-46	Dof family protein