PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08739-augustus-gene-0.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | GATA | ||||||||
Protein Properties | Length: 139aa MW: 15458.1 Da PI: 10.4848 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.9 | 1.6e-19 | 28 | 62 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+tt TplWR gp g+++LCnaCG++yrkk++ maker-scaffold08739-augustus-gene-0.11-mRNA-1 28 CTDCHTTRTPLWRGGPAGPRSLCNACGIRYRKKRR 62 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.2E-14 | 22 | 87 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.796 | 22 | 58 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.38E-13 | 24 | 62 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.9E-16 | 26 | 62 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.51E-12 | 27 | 62 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 28 | 53 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-17 | 28 | 62 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MESKTKRSES EDMNSTLLGG AEELKKSCTD CHTTRTPLWR GGPAGPRSLC NACGIRYRKK 60 RRALLSLDKG EAEKCKKNSI NRSNKGKVGV RLKLGLMALG REMGLHRSLG KEKQIMRKLK 120 EEEQAAMLLM ALSCGCVYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023896349.1 | 3e-95 | GATA transcription factor 16-like | ||||
Swissprot | Q8LG10 | 3e-32 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A2N9HEK5 | 6e-69 | A0A2N9HEK5_FAGSY; Uncharacterized protein | ||||
STRING | XP_010268075.1 | 7e-47 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-34 | GATA transcription factor 15 |
Publications ? help Back to Top | |||
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