PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08359-snap-gene-0.7-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 68aa    MW: 7902.15 Da    PI: 10.7071
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08359-snap-gene-0.7-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.97.1e-311968251
                                   G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
                                              prlrWt+eLH+ Fveave+LGG++kAtPk+il++m+vkgLt++hvkSHLQ
  maker-scaffold08359-snap-gene-0.7-mRNA-1 19 PRLRWTTELHDFFVEAVEHLGGKDKATPKRILQMMNVKGLTISHVKSHLQ 68
                                              8************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3181568IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-281668IPR009057Homeodomain-like
SuperFamilySSF466893.05E-161968IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-241968IPR006447Myb domain, plants
PfamPF002491.6E-102068IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MKNSDRIGSV RQYNKSELPR LRWTTELHDF FVEAVEHLGG KDKATPKRIL QMMNVKGLTI  60
SHVKSHLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-192068351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-192068351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-192068351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-192068351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-192068452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876529.11e-41protein PHR1-LIKE 1-like isoform X2
SwissprotQ700D92e-22MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A438D7041e-29A0A438D704_VITVI; Putative Myb family transcription factor
TrEMBLA0A438HCW24e-31A0A438HCW2_VITVI; Putative Myb family transcription factor
TrEMBLA5C4422e-29A5C442_VITVI; Uncharacterized protein
TrEMBLF6H5792e-31F6H579_VITVI; Uncharacterized protein
STRINGVIT_12s0028g00980.t014e-32(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91862839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-27G2-like family protein