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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold08356-augustus-gene-0.8-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MIKC_MADS |
Protein Properties |
Length: 255aa MW: 29620.5 Da PI: 7.0187 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold08356-augustus-gene-0.8-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 83.6 | 1.2e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+rien + rqvtf+kRr g++KK +ELSvLCda++ +++fss+gklyey+s
maker-scaffold08356-augustus-gene-0.8-mRNA-1 9 SRIENRTTRQVTFAKRRVGLFKKTHELSVLCDAQIGIVVFSSSGKLYEYCS 59
59***********************************************96 PP
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2 | K-box | 54.1 | 6.7e-19 | 83 | 167 | 10 | 94 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74
++ + +++ el+++++e+ +L+ ++ ++ GedL+s ++ +L++Le++Le+s++k+R++ ell
maker-scaffold08356-augustus-gene-0.8-mRNA-1 83 SNDQLGQMHGELKRMQRETLSLELSLQRYTGEDLNSVQFGDLHELEEKLENSVNKVRERMFELLQ 147
5566789999******************************************************* PP
K-box 75 eqieelqkkekelqeenkaL 94
+qi++l++k k+l++en+ +
maker-scaffold08356-augustus-gene-0.8-mRNA-1 148 QQIDNLRRKGKMLHDENEHM 167
*****************976 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 29.366 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.3E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.94E-36 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 6.54E-29 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-19 | 84 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.934 | 87 | 179 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0008360 | Biological Process | regulation of cell shape |
GO:0019252 | Biological Process | starch biosynthetic process |
GO:0043068 | Biological Process | positive regulation of programmed cell death |
GO:0048316 | Biological Process | seed development |
GO:0048481 | Biological Process | plant ovule development |
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MGRRRVSISR IENRTTRQVT FAKRRVGLFK KTHELSVLCD AQIGIVVFSS SGKLYEYCSD 60 TSGMEHIIRR YKIATGTDQI PESNDQLGQM HGELKRMQRE TLSLELSLQR YTGEDLNSVQ 120 FGDLHELEEK LENSVNKVRE RMFELLQQQI DNLRRKGKML HDENEHMCHL IQLRENQVAL 180 EHQAALDQHQ QMAMVAKTED RRRILESFPF SGEDQPSYGL PQVPPIFNPY RLQPTQPNLQ 240 DFSLQLPDYG TSMSS
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