PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold08299-augustus-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 523aa    MW: 56661.6 Da    PI: 8.045
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold08299-augustus-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30282340259
                                                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                                    +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  maker-scaffold08299-augustus-gene-0.10-mRNA-1 282 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILTTTYEGNHNHP 340
                                                    7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-33266342IPR003657WRKY domain
SuperFamilySSF1182902.09E-27274342IPR003657WRKY domain
PROSITE profilePS5081129.39276342IPR003657WRKY domain
SMARTSM007742.7E-36281341IPR003657WRKY domain
PfamPF031062.3E-26283340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MENQDRREFT FLGSGGGGGG NNNDVLRGGP HNKPMMIKEV DFFSNSTSER SARNNNKKPH  60
DHDDETAVKD IGSSTHQVSD PAGVNTGLNL HTPSSGMLKS AYDQERPNIE LIKLRGELDR  120
LHDENGKLRG MLDQITKNYS ELQGQLLMAM QKQAQEYHQG QKVEPNGMSS QRISAQQIMD  180
TRPSTALDVN DPSVSDDNKT QELSVSLSNT MEVMSKERDR HMIKVPRKQT CTEDGLDQSS  240
QSWGSPKSPK LDEAKGEEQA PEVPFRKARV SVRARSDAPL ISDGCQWRKY GQKMAKGNPC  300
PRAYYRCTMA VGCPVRKQVQ RCAEDKTILT TTYEGNHNHP LPPAATAMAN TTSAAAAMLL  360
SGSTTSKEAL TSSGFFPSSM PYVSTMATLS ASAPFPTITL DLTQSPSCNP VQLLHRIPSP  420
SATFPLPLHG VPPQLLGHPM YFPPKLPAPQ VLGQRHSHTS MVETVTAAIA SDPNFTTALA  480
AAISTIMRAP RSNDGSTNPT NGVPAGLPGS PQLPQSCTTF STN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21272342877Probable WRKY transcription factor 4
2lex_A2e-21272342877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023905120.10.0probable WRKY transcription factor 47
TrEMBLA0A2N9G8700.0A0A2N9G870_FAGSY; Uncharacterized protein
STRINGEOX954650.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-94WRKY family protein