PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08297-augustus-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 191aa MW: 22082.4 Da PI: 8.045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 128.9 | 4e-40 | 8 | 164 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................ 49 lppGfrF+Ptd+el+ ++Lk+k++g++ ++ +++e+d yk+ePwd+++ maker-scaffold08297-augustus-gene-0.5-mRNA-1 8 LPPGFRFSPTDKELIERFLKRKITGNDKDI-YFVPEIDFYKLEPWDIQRnllifiithppsflgy 71 79*************************999.78**************95599************* PP NAM 50 ................kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ++++++ew+ F + + + ++g+rknr+t +g+ katgkd+e++s +g+ maker-scaffold08297-augustus-gene-0.5-mRNA-1 72 cvlccqslalwnvdicGIDTKDQEWFCFNPPSLN-QNGNRKNRTTMEGFYKATGKDREIKS-RGS 134 ******99999998887777999******99875.68************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 l+g+kktLv+++gr+p+ge t+Wvmheyr maker-scaffold08297-augustus-gene-0.5-mRNA-1 135 LIGMKKTLVYHRGRTPNGEGTKWVMHEYRT 164 ****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-15 | 5 | 56 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.141 | 8 | 189 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-23 | 9 | 163 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-25 | 83 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGKLSLDLPP GFRFSPTDKE LIERFLKRKI TGNDKDIYFV PEIDFYKLEP WDIQRNLLIF 60 IITHPPSFLG YCVLCCQSLA LWNVDICGID TKDQEWFCFN PPSLNQNGNR KNRTTMEGFY 120 KATGKDREIK SRGSLIGMKK TLVYHRGRTP NGEGTKWVMH EYRTTQDEFD GTHPGQVGFC 180 FSVCLIDVIL T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-30 | 2 | 163 | 9 | 139 | Stress-induced transcription factor NAC1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023872460.1 | 3e-53 | NAC domain-containing protein 62-like | ||||
TrEMBL | A0A2N9EGM8 | 3e-50 | A0A2N9EGM8_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF25165 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-45 | NAC 014 |