PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08188-augustus-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 160aa MW: 18507.8 Da PI: 7.2139 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.1 | 1.9e-41 | 9 | 137 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFsk 63 lp GfrF+Ptdeel+++yL+ k eg++ + +vi+ev+ y+++Pw+Lp +++++++++w+fF+k maker-scaffold08188-augustus-gene-0.7-mRNA-1 9 LPLGFRFSPTDEELINHYLRLKNEGHDSGV-QVIAEVNFYEFDPWELPdlSAIESSNEQWFFFCK 72 699************************988.99**************96448888999******9 PP NAM 64 rdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvm 123 + + ++ nratksgyWkatgk+++++s+ +++l+g+kktLv+++g++pkg++++Wv+ maker-scaffold08188-augustus-gene-0.7-mRNA-1 73 LKIA----SHFNRATKSGYWKATGKERHITSRkwgpsNSSLIGIKKTLVYHTGHDPKGKRSNWVV 133 9776....479********************9999988899************************ PP NAM 124 heyr 127 +ey+ maker-scaffold08188-augustus-gene-0.7-mRNA-1 134 NEYH 137 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.28E-42 | 5 | 143 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.22 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-24 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MANLSLESLP LGFRFSPTDE ELINHYLRLK NEGHDSGVQV IAEVNFYEFD PWELPDLSAI 60 ESSNEQWFFF CKLKIASHFN RATKSGYWKA TGKERHITSR KWGPSNSSLI GIKKTLVYHT 120 GHDPKGKRSN WVVNEYHDIA TRQVCFLEKQ NFSLESQEIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swm_B | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swm_C | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swm_D | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swp_A | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swp_B | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swp_C | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
3swp_D | 1e-33 | 4 | 139 | 15 | 146 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023877826.1 | 1e-74 | NAC domain-containing protein 91-like | ||||
Refseq | XP_023880191.1 | 3e-70 | disease resistance protein At4g27190-like | ||||
Swissprot | F4JN35 | 1e-46 | NTL9_ARATH; Protein NTM1-like 9 | ||||
Swissprot | Q9LKG8 | 6e-47 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | A0A3Q8TBI5 | 5e-49 | A0A3Q8TBI5_DIOKA; Transcription factor NAC10 | ||||
STRING | XP_006476249.1 | 1e-47 | (Citrus sinensis) | ||||
STRING | XP_008360722.1 | 2e-47 | (Malus domestica) | ||||
STRING | cassava4.1_032341m | 5e-49 | (Manihot esculenta) | ||||
STRING | XP_006439176.1 | 1e-47 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 3e-49 | TCV-interacting protein |
Publications ? help Back to Top | |||
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