PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold08137-snap-gene-0.8-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 934aa MW: 105754 Da PI: 6.7102

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold08137-snap-gene-0.8-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.7	2.1e-44	15	145	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkky 68 p+G+rFhPtdeelv++yL+ k++g+k + ++++ev+i+k+ePwdLp ++++++++ew+fF+ r+ k+ maker-scaffold08137-snap-gene-0.8-mRNA-1 15 PVGYRFHPTDEELVSYYLRLKMQGDKEYEVRAVREVNICKYEPWDLPglSAIDSDDHEWFFFCAREIKS 83 89********************99766699***********6448888999*****999 PP NAM 69 at..gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 + +r+nratk+gyWk+tg+d+++++k +++++g+kktLvf++gr p+g++t+Wv+hey+ maker-scaffold08137-snap-gene-0.8-mRNA-1 84 FSggRSRANRATKRGYWKSTGRDRNIKVKgTNNVIGTKKTLVFHEGRVPNGRRTSWVIHEYQ 145 872246899***************967778*************************7 PP
2	NAM	100.1	3.2e-31	462	574	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyat 70 p+GfrF+Ptdeel+++yLk k++g + + ++i e ++++++ew+fF+ r+ ky++ maker-scaffold08137-snap-gene-0.8-mRNA-1 462 PVGFRFRPTDEELISHYLKLKMQGGRDVEVRAIGE--------------IQSDDQEWFFFCAREIKYPN 516 89********************99444344443..............346889********** PP NAM 71 gkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 +kr+nr t++gyWk+tg+d+ ++++ +++++g+kktLv++ gr ++g++ Wv+h+y+ maker-scaffold08137-snap-gene-0.8-mRNA-1 517 SKRSNRLTEKGYWKSTGTDRYIKARgTNNVIGTKKTLVYHVGRGQNGVRKPWVIHQYQ 574 ********************967778*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-47	9	164	IPR003441	NAC domain
PROSITE profile	PS51005	51.105	14	164	IPR003441	NAC domain
Pfam	PF02365	4.2E-25	15	145	IPR003441	NAC domain
SuperFamily	SSF101941	3.79E-40	448	593	IPR003441	NAC domain
PROSITE profile	PS51005	32.002	461	593	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	462	574	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 934 aa Download sequence Send to blast
MTSMAYSETG LDSIPVGYRF HPTDEELVSY YLRLKMQGDK EYEVRAVREV NICKYEPWDL 60 PGLSAIDSDD HEWFFFCARE IKSFSGGRSR ANRATKRGYW KSTGRDRNIK VKGTNNVIGT 120 KKTLVFHEGR VPNGRRTSWV IHEYQPATFP PHQKAFVLCR LFKKADVRTN EAPFDDGDVS 180 SYAASDFEGQ VPGHTIPEIH EFNQVDAGLA SVHQHQRQDY DIASSLQLEE YNQQEPPDLD 240 PTFTDDLDFY VRQCLSDDSE LEKDQFVNSL FNQQDEYTFA EVRQSNDSRA PDSPITRYYD 300 GGLSSDSDTD TAQSQNQQRH MINGGTASLS NRGQYKEKRN GVDVFLGLGS SSVDSAADIP 360 HVRSLQSPPS IGAFNLQYQQ ISRPSEVQRA APSKFQLKSS SLKVVSLEKA KDASRLSITT 420 NLPQKERSIT ESDKEQKMAQ GTNADNKMTS MTSYGPGLES IPVGFRFRPT DEELISHYLK 480 LKMQGGRDVE VRAIGEIQSD DQEWFFFCAR EIKYPNSKRS NRLTEKGYWK STGTDRYIKA 540 RGTNNVIGTK KTLVYHVGRG QNGVRKPWVI HQYQPVTFNP HEKPFVLCRL FKKPDVRTNE 600 APRDDGDVSR YAASDFEGQV PGHTIPGIHE FNPEDAYLAS LLQSQHQDYD FAYSLQLEEY 660 NRPEPTAVDP IFTNGFEQNN DFANEQAEVQ FVNSFINQQD EYTIEEFRQS NDSRAPDSPI 720 TIYYDGGGLS SDSDTDTAQA QHQQMHIINS GTAFSSNHGQ YKEKRNGVVL HTSSVDSAAD 780 IRHVLSTQSQ DQRSPPSIGT LKLQYQPRSC HSVEQRAAPR KFHLKNGSLK VVSTDKAKDA 840 SRLSITTNLP QKEKSITESE KERKMAQGTN ADNSPKLKKV RSAGSDRKGS LIFQETSQKG 900 HESTPRLVYF VKILIGIFLF VVFIREMLLY GNWC

Sequence ? help Back to Top

Protein Sequence Length: 934 aa Download sequence Send to blast

MTSMAYSETG LDSIPVGYRF HPTDEELVSY YLRLKMQGDK EYEVRAVREV NICKYEPWDL  60
PGLSAIDSDD HEWFFFCARE IKSFSGGRSR ANRATKRGYW KSTGRDRNIK VKGTNNVIGT  120
KKTLVFHEGR VPNGRRTSWV IHEYQPATFP PHQKAFVLCR LFKKADVRTN EAPFDDGDVS  180
SYAASDFEGQ VPGHTIPEIH EFNQVDAGLA SVHQHQRQDY DIASSLQLEE YNQQEPPDLD  240
PTFTDDLDFY VRQCLSDDSE LEKDQFVNSL FNQQDEYTFA EVRQSNDSRA PDSPITRYYD  300
GGLSSDSDTD TAQSQNQQRH MINGGTASLS NRGQYKEKRN GVDVFLGLGS SSVDSAADIP  360
HVRSLQSPPS IGAFNLQYQQ ISRPSEVQRA APSKFQLKSS SLKVVSLEKA KDASRLSITT  420
NLPQKERSIT ESDKEQKMAQ GTNADNKMTS MTSYGPGLES IPVGFRFRPT DEELISHYLK  480
LKMQGGRDVE VRAIGEIQSD DQEWFFFCAR EIKYPNSKRS NRLTEKGYWK STGTDRYIKA  540
RGTNNVIGTK KTLVYHVGRG QNGVRKPWVI HQYQPVTFNP HEKPFVLCRL FKKPDVRTNE  600
APRDDGDVSR YAASDFEGQV PGHTIPGIHE FNPEDAYLAS LLQSQHQDYD FAYSLQLEEY  660
NRPEPTAVDP IFTNGFEQNN DFANEQAEVQ FVNSFINQQD EYTIEEFRQS NDSRAPDSPI  720
TIYYDGGGLS SDSDTDTAQA QHQQMHIINS GTAFSSNHGQ YKEKRNGVVL HTSSVDSAAD  780
IRHVLSTQSQ DQRSPPSIGT LKLQYQPRSC HSVEQRAAPR KFHLKNGSLK VVSTDKAKDA  840
SRLSITTNLP QKEKSITESE KERKMAQGTN ADNSPKLKKV RSAGSDRKGS LIFQETSQKG  900
HESTPRLVYF VKILIGIFLF VVFIREMLLY GNWC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-29	13	595	14	170	Stress-induced transcription factor NAC1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023925291.1	0.0	NAC domain-containing protein 96-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.1	5e-55	NAC transcription factor-like 9