PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07806-snap-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 1747aa    MW: 190428 Da    PI: 5.7213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07806-snap-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.1e-08799840346
                                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                +WT eE  ++ d  + +G++ +++Ia+ +  ++t  +c+++++k
  maker-scaffold07806-snap-gene-0.12-mRNA-1 799 PWTSEEKAIFMDKLTTFGKD-FRKIASFLD-HKTTADCVEFYYK 840
                                                8*****************99.*********.***********98 PP
2Myb_DNA-binding28.34.2e-0910151055345
                                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                            Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                                                  WT eE   +++av  +G++ +  I+r++  +R++ qck ++ 
  maker-scaffold07806-snap-gene-0.12-mRNA-1 1015 DWTDEEKSVFIQAVSSYGKD-FVMISRCVR-TRSRDQCKVFFS 1055
                                                 6*****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-13783843IPR009057Homeodomain-like
PROSITE profilePS5129314.012795846IPR017884SANT domain
SMARTSM007177.5E-7796844IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-5799845IPR009057Homeodomain-like
PROSITE profilePS5129311.15610111062IPR017884SANT domain
SMARTSM007171.8E-710121060IPR001005SANT/Myb domain
SuperFamilySSF466892.42E-1010131062IPR009057Homeodomain-like
PfamPF002492.3E-610151055IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-510151056IPR009057Homeodomain-like
CDDcd001672.23E-610161054No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1747 aa     Download sequence    Send to blast
MPPEPLSSDR KERKHDRSSE SLGSAVRWRG DSSYHGSREF YRGGSAEFRR PTGHGKQGGW  60
HMYTEESGHG YVPSRSGDKM LEDEGCRLSF SRGDGKYGRS SRENRFSQRD WKGHSWETGI  120
GSPNTPGRLI DVSNNDLRSV DDMITCSSHP NSDFVNTWDR LHLKDQHDKM IGVNGLSTGQ  180
RCDRENSLGS TDWKTFKWSR SGSLSSRGSG FSHSSSSKSM GGVDSNETKA DVQHKNATPI  240
QSPSGDAAAC VTSAAPFEEA TSKKKPRLGW GEGLAKYEKK KVEGPDVSVN KDGALVFTIN  300
TEPIHSFVSN MAEKSPRVTG FSDCASPATP SSVACSSSPG VEDKSFGKAA NIDNDISNLC  360
VSPSPVSQNL LEGFPFNLEK LDTNSISNLG SSLVELLQPD DPSSVDSSYE RGTAINKLLI  420
FKGEISKALE LTESEIDLLE NELKSLKSES QSGDPCPAAS SSFPVENNVK PCNEPDAVSS  480
LIPRPAQLHV VSFGDTVAEK IPVCNGASEE VHAALKDDDM DSPGTATSKF VEPLSFVKVV  540
SSPDKVEHGD SSGNLDAIQF QSGDVDVKCS VDVDVDVKCS VPGSGWDNTG ALVSNEVSPH  600
TDGEEPLCDL ILASNRECAS RASEVFKRLL PRDQCMTDIF QAAKFSSCQD SSLIKEKFAK  660
RKQFLRFKER VITLKFKAFQ HLWKEDMRLL SVRKHRPKSQ KKSELSLRTT HNGNQRHRSS  720
IRSRFSSPAG NLSLVPTTEI INFTSKLLSD SQVKLYRSAL KMPALILDKK EKIVSRFVSS  780
NGLVEDPCAV EKERAMINPW TSEEKAIFMD KLTTFGKDFR KIASFLDHKT TADCVEFYYK  840
NHKSDCFEKT KKQDCSKQAK SSTNTYLLTG KKWNREMNAA SLDMLGAASM MAACADDHTR  900
NRQSNAGRVF LGGYSESKTL WGDDVILERS GSLDILANER ETVAADVLAG ICGSLSSEAM  960
SSCITSSVDP GESLREWKCQ KVDSLIKRPL TPDVTQDVDD ETCSDESCGE MDPSDWTDEE  1020
KSVFIQAVSS YGKDFVMISR CVRTRSRDQC KVFFSKARKC LGLDLMHPGP RNVGAPVSDD  1080
ANGGGSDPED ACVVETGETG SAICCNKSGS RLEEDLPLSN VEMNHDYDPT KIVNLQSDLN  1140
RLQEDNGMEY TGQEVVEAVD TLVSGAGQTE DRPELAVHGE NNIMDGVKIQ SDSVHSEKTA  1200
VVLAHNEIGG DQVIEQGIPI AEPVSVEEAI DSGPFSDALV ENIAVASEGF ENELGRQELP  1260
ESSLNGQDEK CNADTSGLQC SIRDSNATGN ASHQAADGSC SGFSLKPEYQ HQISLESEYM  1320
EKPHVSLPQQ NSPTTATSVS QDSAAISCDT RLPSTLDFHG SRDKHSLKSV HQHLPGHALF  1380
DHVESSQILR GYPLQISKKK EMNGDVSCRN LSEIQNLSQS ERNISTRCMT QDCFLQKCSS  1440
SKPLSSVAEL PLLSQKREQT SDHSRARSRS LSDADKPCRN GDVKLFGQIL SKTASTPKSN  1500
SSTRENEEKG VNNPKSSSSL SNLKISGIPN VDGSSALLKI DGNNYLVENV PMSYGFWDGN  1560
KIQAGFSSFT DSAFLLAKYP TAFASYPTPS TKIEAPPPLQ SVVKSNERNV NGVSPVFPSR  1620
EISSSNGVRE ISSSNGVADY QVYRSREGAK VQPFTVDMKQ RQDTLFSEMQ RRKGFEAVSS  1680
LQPQGRGVVG MNVVGRGVLV GGPCTSVSDP VKAIKMHFAN SDQYGGGQSG SIIREEESWR  1740
GKGDIGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C3e-14757848494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D3e-14757848494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889571.10.0uncharacterized protein LOC112001630
RefseqXP_023889572.10.0uncharacterized protein LOC112001630
TrEMBLA0A2N9E3W90.0A0A2N9E3W9_FAGSY; Uncharacterized protein
STRINGEMJ215100.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49863352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.11e-133MYB family protein