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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold07754-augustus-gene-0.5-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | Trihelix | ||||||||
Protein Properties | Length: 538aa MW: 61370.1 Da PI: 4.9967 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.2 | 2.6e-29 | 54 | 137 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 rW++qe+la++++r++m++++r++++k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++k maker-scaffold07754-augustus-gene-0.5-mRNA-1 54 RWPRQETLAMLKIRSDMDDAFRDASSKAPLWEQVSRKLAELGYNRSAKKCKEKFENIYKYHKRTK 118 8**************************************************************** PP trihelix 66 egekkrtsessstcpyfdqle 86 + +++r + + +++f+ql+ maker-scaffold07754-augustus-gene-0.5-mRNA-1 119 DVRSSRP--NGKAYRFFEQLQ 137 *****84..4456******98 PP | |||||||
2 | trihelix | 101.3 | 7.8e-32 | 374 | 459 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 rW+k+ev aLi++r++++ r++++ k+plWee+s +m++ g+ r++k+Ckekwen+nk++k++k maker-scaffold07754-augustus-gene-0.5-mRNA-1 374 RWPKDEVEALIKLRTNLDFRYQENGPKAPLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVK 438 8**************************************************************** PP trihelix 66 egekkrtsessstcpyfdqlea 87 e++kkr s++s+tcpyf+ql+a maker-scaffold07754-augustus-gene-0.5-mRNA-1 439 ESNKKR-SDDSKTCPYFQQLDA 459 *****8.89999********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.21 | 51 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.24E-22 | 53 | 118 | No hit | No description |
Pfam | PF13837 | 3.9E-19 | 53 | 139 | No hit | No description |
PROSITE profile | PS50090 | 6.829 | 53 | 111 | IPR017877 | Myb-like domain |
PROSITE profile | PS50090 | 7.7 | 367 | 431 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-4 | 368 | 430 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0067 | 371 | 433 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.2E-21 | 373 | 460 | No hit | No description |
CDD | cd12203 | 1.08E-23 | 374 | 438 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MLENSAVPES NTATTGNREN DEGGGSVSVG SGEEERVGGG AEEGGGDRSF GGNRWPRQET 60 LAMLKIRSDM DDAFRDASSK APLWEQVSRK LAELGYNRSA KKCKEKFENI YKYHKRTKDV 120 RSSRPNGKAY RFFEQLQALD GQTQLRSPSP EKIQASLAET TMVVRTVEPR NVVQNAIPRS 180 IIRNGNLAEN YTPTTSSSSK ESEGMRKKKK KLTEYFEDLM KEVIEKQENL QKKFIDVLEK 240 CEQDRIAREE EWKIQELDRI KRERELLVQE RSIAAAKDAA VLAFLKKFSE QASSVQLPEE 300 TIMVTIPVEK FVERQENDNG GNFMDKQEKQ NGDNVLDRQE DDNGGNNLER QENDNGENSI 360 QMSSGRWPQM SSARWPKDEV EALIKLRTNL DFRYQENGPK APLWEEISLA MKKLGYDRNA 420 KRCKEKWENI NKYFKRVKES NKKRSDDSKT CPYFQQLDAL YSGKTKKVEN SVNSGCELKP 480 EELLMHMMSG QEERQRTESL TEDGEGENVN EIEGDKEDED GDNYQVVASD PSSTANLA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023926716.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
Swissprot | Q39117 | 1e-66 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A2N9G9B6 | 0.0 | A0A2N9G9B6_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_006275m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-113 | Trihelix family protein |