PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07695-snap-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 341aa    MW: 38339.1 Da    PI: 5.9247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07695-snap-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53e-10321339826
                                                GGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   8 ffartGtCkyGdrCkFaHg 26 
                                                 +  tG+C++G++C+FaHg
  maker-scaffold07695-snap-gene-0.19-mRNA-1 321 EWELTGYCPFGSKCHFAHG 339
                                                6889**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.51E-1974147No hitNo description
Gene3DG3DSA:3.30.40.108.5E-1994142IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136393.4E-1396139IPR001841Zinc finger, RING-type
CDDcd001622.00E-996142No hitNo description
PROSITE profilePS5008911.75297139IPR001841Zinc finger, RING-type
SMARTSM001849.4E-697138IPR001841Zinc finger, RING-type
SMARTSM0035621256279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5265280IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.901267280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-12310340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.432313341IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4313340IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7321339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSTDPSPTFN PISASPVTTF LTVILVAFFL LGFFTIYVCR CFLENVTDTL QIQQTLSGNI  60
IGEAARTGLD PSLIQSFPTF LYSSVKDFHK EEYGLECAIC LLEFEDDSLL RLLPVCYHVF  120
DQECIDLWLE SHKTCPVCRR DLDLPPDSLD KYSKELICKH KHMHDSHHEN NNQSLEDAVR  180
IDIKEDEHGG EGQDEHALKR KQMDEDKKVE RIARSHTTGH SVVRTREGQD SVDRYTLRLP  240
EHVKVRLIRG HNSAKGSKTF GSDEEGCPYG ENCTFLHNEQ SKNRESVAIS LGPGGYGGAA  300
ATPVSGPNAM PSNWKTRIYN EWELTGYCPF GSKCHFAHGV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1iym_A1e-1394139550EL5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923054.11e-150RING-H2 finger protein ATL29-like
TrEMBLA0A2N9GB981e-100A0A2N9GB98_FAGSY; Uncharacterized protein
STRINGXP_006491753.13e-78(Citrus sinensis)
STRINGXP_006445709.13e-78(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.16e-22C3H family protein