PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

maker-scaffold07605-snap-gene-0.12-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HB-other

Protein Properties

Length: 1661aa MW: 187320 Da PI: 5.6076

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold07605-snap-gene-0.12-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.8	1.6e-12	4	39	22	57
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + yps+++r+eL++klgL++rq ++WF+ rR k+kk maker-scaffold07605-snap-gene-0.12-mRNA-1 4 ETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKDKK 39 67********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0083	1	44	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.491	1	40	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.64E-9	4	43	IPR009057	Homeodomain-like
Pfam	PF00046	5.0E-10	4	39	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.1E-11	5	39	IPR009057	Homeodomain-like
CDD	cd00086	2.29E-8	6	39	No hit	No description
PROSITE profile	PS50827	16.697	526	585	IPR018501	DDT domain
SMART	SM00571	7.4E-22	526	585	IPR018501	DDT domain
Pfam	PF02791	2.6E-17	527	582	IPR018501	DDT domain
Pfam	PF05066	5.2E-15	708	776	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.5E-8	858	902	IPR028942	WHIM1 domain
Pfam	PF15613	2.2E-12	1042	1114	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1661 aa Download sequence Send to blast
MEVETYPSEA TRAELSEKLG LSDRQLQMWF CHRRLKDKKD GSAKKPRKSA STAVVAAMPE 60 SPVDELRGGG EPGSDYGSGS GSGSGSSPLG RSEFRNAVSR SVLDDVPIMR RYYESPQSIL 120 ELRAIACVEA QLGEPLREDG PILGVEFDSL PPDAFGAPIG MAIAVSEQPK RLGHPYEGKL 180 YEQRDVKSYK CKVEVEVVGP RPTQATQRAL HEYPFLHDQP GARPDAFGQV SQSHFHDSML 240 DAPTARTSSV VHGNEQLPRV HGVQGHVPRV RIFPQQEKQA LALSSPPRDD ERVPQRESLT 300 NVRVSSQFGD HPIIGPEDSY VLSDGQISHS EAILRMEKKR KSEEARIAKE VEAHEIRIRK 360 ELEKQDILRR KNEERMKKEM EKQDRERKKE EERLMRERQR EEERSKREQK REMERREKFL 420 QKENLRAEKR RQKEELRKEK EAVRRKAAIE KATARRIARE SMELIEDEQL ELMELAVASK 480 GLSSMIHLDH DTLQNIESFR DLLSAFPPKS VKLKKPFAVQ PWINSEENIG NLLMVWRFLI 540 TFADVLKLWP FTLDEFVQAF HDYDSRLLGE IHLALLKLII KDIEDVARTP STGLVVNQNG 600 AANPGGGHPQ IVEGAYAWGF DIRNWQRHLN PLTWPEIFRQ LALSAGFGPQ LKKRSVRWSY 660 SHENDEGKGC EDIVSTLRNG SAAENAFAIM QEKGLLLPRR SRHRLTPGTV KFAAFHVLSL 720 EGGKGLTVLE LADKIQKSGL RDLTTSKTPE ASISVALTRD AKLFERIAPS TYRVRAAFRK 780 DPADAEAILS AARKKIQIFE NGFLAEDAEY TELEKDFSSI PLAGPKDENC PSTASELCVV 840 GGGISAVNQE NMEIDESKSG ESWIQGLTEG DYSDLSVEER LNALVTLIGV ANEGNSIRGV 900 LEDRMESANA LKKQMWAEAQ LDKSRLKEEI ISKADFSSSI TGSRAEMQFL SSAVEGSQSP 960 FPNVDNQLIE ASPSTAENQN PLVSQGIQDH LNNVPTERTP GQDFPTGPDN FLIQQLGYAS 1020 KRSRSQLKSY IAHRAEEMYV YRSLPLGQDR RRNRYWQFVA SASSNDPGSG RIFIELHDGN 1080 WRLIDSEEAF DALLISLDAR GIRESHLRLM LQKIESSFKE NVQRNMPSAN VVGRSGTMVK 1140 NEADEMTSSP DCPAGFDSPS STVCGLNSDM LETSSSFRIE LGRNETEKKA ALNRYQDFQK 1200 WTWKECFNSV TLCAMKYGKK RCSQLLGVCD FCLNCYLSED SHCLSCHRSF GTSNNDFNFS 1260 EHAIQCEEKR KIHMGSFQIL DSSLPLGTRL LKSLLAFIEV SVPPEALQSY WMGDHRKTWG 1320 VKLNASSSVE DLLQRVLKRD FLSSNFATTE ELLGSCTQSG SSLHDFSDPR SIPVLPWIPQ 1380 TMTAVALRLF ELDASVIYLK QEKPEPFEDK EVREYIKLPS RYAPFDNVKE VELTELNHDE 1440 KNFTELKSNR NSYKRGRGGR EQGRGKKWQK KARVSYSEVG RRNVKSNENL IQGLRQQGQR 1500 TYGQGSGRGR RTVRRRRVEK RAVDERLPSH RADTYRPKSI DDSPRNLGEE WDDERISMHP 1560 MEDPNFNDAE AVDSDDNAQA VEYEHGNWEI GFASASNGWR EDLNEASDED VDASEDDNVI 1620 EEAGDEDSEA DVDMSDGSDG ITNRVGNDEG SESADSDDYS D

Sequence ? help Back to Top

Protein Sequence Length: 1661 aa Download sequence Send to blast

MEVETYPSEA TRAELSEKLG LSDRQLQMWF CHRRLKDKKD GSAKKPRKSA STAVVAAMPE  60
SPVDELRGGG EPGSDYGSGS GSGSGSSPLG RSEFRNAVSR SVLDDVPIMR RYYESPQSIL  120
ELRAIACVEA QLGEPLREDG PILGVEFDSL PPDAFGAPIG MAIAVSEQPK RLGHPYEGKL  180
YEQRDVKSYK CKVEVEVVGP RPTQATQRAL HEYPFLHDQP GARPDAFGQV SQSHFHDSML  240
DAPTARTSSV VHGNEQLPRV HGVQGHVPRV RIFPQQEKQA LALSSPPRDD ERVPQRESLT  300
NVRVSSQFGD HPIIGPEDSY VLSDGQISHS EAILRMEKKR KSEEARIAKE VEAHEIRIRK  360
ELEKQDILRR KNEERMKKEM EKQDRERKKE EERLMRERQR EEERSKREQK REMERREKFL  420
QKENLRAEKR RQKEELRKEK EAVRRKAAIE KATARRIARE SMELIEDEQL ELMELAVASK  480
GLSSMIHLDH DTLQNIESFR DLLSAFPPKS VKLKKPFAVQ PWINSEENIG NLLMVWRFLI  540
TFADVLKLWP FTLDEFVQAF HDYDSRLLGE IHLALLKLII KDIEDVARTP STGLVVNQNG  600
AANPGGGHPQ IVEGAYAWGF DIRNWQRHLN PLTWPEIFRQ LALSAGFGPQ LKKRSVRWSY  660
SHENDEGKGC EDIVSTLRNG SAAENAFAIM QEKGLLLPRR SRHRLTPGTV KFAAFHVLSL  720
EGGKGLTVLE LADKIQKSGL RDLTTSKTPE ASISVALTRD AKLFERIAPS TYRVRAAFRK  780
DPADAEAILS AARKKIQIFE NGFLAEDAEY TELEKDFSSI PLAGPKDENC PSTASELCVV  840
GGGISAVNQE NMEIDESKSG ESWIQGLTEG DYSDLSVEER LNALVTLIGV ANEGNSIRGV  900
LEDRMESANA LKKQMWAEAQ LDKSRLKEEI ISKADFSSSI TGSRAEMQFL SSAVEGSQSP  960
FPNVDNQLIE ASPSTAENQN PLVSQGIQDH LNNVPTERTP GQDFPTGPDN FLIQQLGYAS  1020
KRSRSQLKSY IAHRAEEMYV YRSLPLGQDR RRNRYWQFVA SASSNDPGSG RIFIELHDGN  1080
WRLIDSEEAF DALLISLDAR GIRESHLRLM LQKIESSFKE NVQRNMPSAN VVGRSGTMVK  1140
NEADEMTSSP DCPAGFDSPS STVCGLNSDM LETSSSFRIE LGRNETEKKA ALNRYQDFQK  1200
WTWKECFNSV TLCAMKYGKK RCSQLLGVCD FCLNCYLSED SHCLSCHRSF GTSNNDFNFS  1260
EHAIQCEEKR KIHMGSFQIL DSSLPLGTRL LKSLLAFIEV SVPPEALQSY WMGDHRKTWG  1320
VKLNASSSVE DLLQRVLKRD FLSSNFATTE ELLGSCTQSG SSLHDFSDPR SIPVLPWIPQ  1380
TMTAVALRLF ELDASVIYLK QEKPEPFEDK EVREYIKLPS RYAPFDNVKE VELTELNHDE  1440
KNFTELKSNR NSYKRGRGGR EQGRGKKWQK KARVSYSEVG RRNVKSNENL IQGLRQQGQR  1500
TYGQGSGRGR RTVRRRRVEK RAVDERLPSH RADTYRPKSI DDSPRNLGEE WDDERISMHP  1560
MEDPNFNDAE AVDSDDNAQA VEYEHGNWEI GFASASNGWR EDLNEASDED VDASEDDNVI  1620
EEAGDEDSEA DVDMSDGSDG ITNRVGNDEG SESADSDDYS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	32	39	RRLKDKKD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM450850	3e-47	AM450850.2 Vitis vinifera contig VV78X157592.9, whole genome shotgun sequence.
GenBank	AM471762	3e-47	AM471762.2 Vitis vinifera contig VV78X270915.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018811588.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2N9G746	0.0	A0A2N9G746_FAGSY; Uncharacterized protein
STRING	EMJ15808	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1