PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07581-snap-gene-0.5-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 751aa    MW: 82631.6 Da    PI: 5.537
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07581-snap-gene-0.5-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2059114156
                                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                               +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  maker-scaffold07581-snap-gene-0.5-mRNA-1  59 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                                               688999***********************************************999 PP
2START2083.6e-652484911206
                                               HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHH CS
                                     START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlall 61 
                                               ela +a++el+++a+ +ep+W++     ++ n+de++++f+++ +     ++ ea+r+++vv+m++ +l
  maker-scaffold07581-snap-gene-0.5-mRNA-1 248 ELAVAAMEELIRMAQMGEPLWMTNLdgtSMINEDEYIRTFPRGIGprpsgFKCEASRETAVVIMNHINL 316
                                               57899*************************************999************************ PP

                                               HHHHCCCGGCT-TT-S....EEEEEEEECTT..............................EEEEEEEE CS
                                     START  62 veellddkeqWdetla....kaetlevissg..............................galqlmva 96 
                                               ve+l+d++ qW++ +     +a tlev+s+g                              + l +m+a
  maker-scaffold07581-snap-gene-0.5-mRNA-1 317 VEILMDVS-QWSTVFSgivsRALTLEVLSTGvagnyngalqvgrlcvymqvnqfgsndidsNLLLQMTA 384
                                               ********.************************************************************ PP

                                               XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
                                     START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                                               e+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p     vR++++pSg+li++++ng+skv
  maker-scaffold07581-snap-gene-0.5-mRNA-1 385 EFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPSPA----VRCRRRPSGCLIQEMPNGYSKV 449
                                               ****************************************995....********************** PP

                                               EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                                     START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                               twveh+++++r +h+l+++lv+sg a+gak+wvatl+rqce+
  maker-scaffold07581-snap-gene-0.5-mRNA-1 450 TWVEHIEVDDRGVHNLYKQLVSSGNAFGAKRWVATLDRQCER 491
                                               ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2338114IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1947116IPR009057Homeodomain-like
PROSITE profilePS5007116.92556116IPR001356Homeobox domain
SMARTSM003891.2E-1957120IPR001356Homeobox domain
PfamPF000464.2E-1859114IPR001356Homeobox domain
CDDcd000862.63E-1959117No hitNo description
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
SuperFamilySSF559612.61E-33239348No hitNo description
PROSITE profilePS5084844.427239494IPR002913START domain
CDDcd088753.77E-124243490No hitNo description
SMARTSM002345.1E-56248491IPR002913START domain
PfamPF018521.4E-54249491IPR002913START domain
SuperFamilySSF559612.61E-33380493No hitNo description
Gene3DG3DSA:3.30.530.202.5E-5390482IPR023393START-like domain
SuperFamilySSF559614.45E-24510743No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MFQPNMMDGQ LHQLDMAQNT SESDLARIRD DEFDSATKSG SENHEGASGD DQDPRPNKKK  60
RYHRHTQHQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKTQHERH  120
ENTNLRTENE KLRADNMRYR EALSNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR  180
ISAIAAKYVG KPVVNYPLLS PPVPTRPLDL GVGSFGGQPG IGGEMYGAGD LLRTINAPTE  240
ADKPMIIELA VAAMEELIRM AQMGEPLWMT NLDGTSMINE DEYIRTFPRG IGPRPSGFKC  300
EASRETAVVI MNHINLVEIL MDVSQWSTVF SGIVSRALTL EVLSTGVAGN YNGALQVGRL  360
CVYMQVNQFG SNDIDSNLLL QMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD  420
NLRPSPAVRC RRRPSGCLIQ EMPNGYSKVT WVEHIEVDDR GVHNLYKQLV SSGNAFGAKR  480
WVATLDRQCE RLASAMATNI PTGDIGVITN QEGRKSMLKL AERMVISFCA GVSASTTHTW  540
TTLSGTGADD VRVMTRKSID DPGRPPGIVL SAATSFWLPV PPKRVFDFLR DENSRSEWDI  600
LSNGGVVQEM AHIANGRETG NCVSLLRVNS ANSSQSNMLI LQESCTDPTA SFVIYAPVDI  660
VAMNLVLNGG DPDYVALLPS GFAILPDGTM AHEGGIGEAT TSGGSLLTVA FQILVDSVPT  720
AKLSLGSVAT VNNLIACTVE RIKASLSCEN A
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915054.10.0homeobox-leucine zipper protein HDG2 isoform X2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A2N9E4J40.0A0A2N9E4J4_FAGSY; Uncharacterized protein
STRINGXP_002524172.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2