PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07229-snap-gene-0.10-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 462aa    MW: 51427.4 Da    PI: 7.7562
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07229-snap-gene-0.10-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-08142163426
                                                ---SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                                + C f+ + GtC yGd+C++ H+
  maker-scaffold07229-snap-gene-0.10-mRNA-1 142 RVCEFWVQ-GTCVYGDQCPYLHS 163
                                                78******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8963157IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986138165IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5138164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7139163IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-5142163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5142163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.3E-44168457IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.0E-6169208IPR001680WD40 repeat
SuperFamilySSF509783.66E-45169458IPR017986WD40-repeat-containing domain
PfamPF004008.0E-4172208IPR001680WD40 repeat
PROSITE profilePS5008213.048176217IPR001680WD40 repeat
PROSITE profilePS5029419.09176380IPR017986WD40-repeat-containing domain
PRINTSPR003208.7E-7195209IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780195209IPR019775WD40 repeat, conserved site
SMARTSM0032062248285IPR001680WD40 repeat
SMARTSM003202.1E-7293331IPR001680WD40 repeat
PfamPF004002.7E-5298331IPR001680WD40 repeat
PROSITE profilePS5008211.778300340IPR001680WD40 repeat
PRINTSPR003208.7E-7318332IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4334371IPR001680WD40 repeat
PfamPF004000.01335370IPR001680WD40 repeat
PROSITE profilePS500828.604341370IPR001680WD40 repeat
PRINTSPR003208.7E-7358372IPR020472G-protein beta WD-40 repeat
SMARTSM0032069377418IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEIKTARRGP QGKESSVFDR LGAGRGGHLN NSNNKICKFW LSGRCLKNPC RFAHSETPDV  60
ATIHRPRQTP YYPRSSNALV SNTWRRALWN SQNVHEKMFL GSLNQIWKIL KRSRQKAFLR  120
VLQNNVVEEK PLEHVPTKTA ERVCEFWVQG TCVYGDQCPY LHSWFRGDKF KRLAELQGHN  180
KAVNGIALPL RCNKLCSGSS DGTIQLWDCH TGQCANVINL GGEVGSVCSE GPWLFVGMPN  240
VVKVWNTESG AEYSLNGPVG QVNALESVND LLFAGVEDGV ILAWKGTCES NLTFQLAVTL  300
KGHTHGITSL VVGGGNRLYS GSKDHTIRVW DHENWQCIVT LNGHDDVVKS LMCWDKYLFS  360
GSLDCTIKVW ASTDDGSLEV IYTHSEEQGI LALSGMTDPD VKPILYCSCS DKSVHLYELP  420
TFTDRGRVFA KQEVQTIQIG PAGLFFTGDQ TGLLTVYTWL AD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A5e-221714216323Tako8
6g6n_A5e-221714216323Tako8
6g6n_B5e-221714216323Tako8
6g6n_C5e-221714216323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896327.10.0zinc finger CCCH domain-containing protein 48-like
TrEMBLA0A2N9IQ390.0A0A2N9IQ39_FAGSY; Uncharacterized protein
STRINGXP_008232135.11e-162(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF231645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-140zinc finger WD40 repeat protein 1