PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07117-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 408aa    MW: 43857.1 Da    PI: 8.2803
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07117-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.29e-11158182226
                                                    -S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                                    +++ C +++ t tCk+Gd+C+F H+
  maker-scaffold07117-augustus-gene-0.11-mRNA-1 158 GEKDCAHYMLTRTCKFGDSCRFDHP 182
                                                    7889********************8 PP
2zf-CCCH35.31.9e-11210236127
                                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                                    ++++ C+ff++t  Ck+G rCkF+H++
  maker-scaffold07117-augustus-gene-0.11-mRNA-1 210 PGMPDCPFFLKTQRCKFGLRCKFNHPK 236
                                                    5789*********************96 PP
3zf-CCCH38.91.4e-12259283327
                                                    S---SGGGGTS--TTTTT-SS-SSS CS
                                        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                                    +++C f+++tG Ck+G++CkF+H++
  maker-scaffold07117-augustus-gene-0.11-mRNA-1 259 EPPCAFYMKTGKCKFGPTCKFNHPK 283
                                                    79*********************96 PP
4zf-CCCH38.42.1e-12336361126
                                                    --S---SGGGGTS--TTTTT-SS-SS CS
                                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                    ++++ C+f+++tG CkyG++C+++H+
  maker-scaffold07117-augustus-gene-0.11-mRNA-1 336 PGEADCPFYLKTGSCKYGATCRYNHP 361
                                                    57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0014156183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601156184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5157183IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8158182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4162181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.896209237IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6209236IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9211236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5214239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4215236IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6256283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126256284IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10259283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6260284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5261282IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-7335362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.432335363IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10337361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5339362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4341360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAHQLYGYNP SSSSSASTSS VYGAAATPTH NASSYTTSSS RSLSSDQYVP SSIRYSSSAA  60
AAAKYSTSAA MYDGGFHYST SSSTPNSTSH LASQSSWSDA SDALAAFKRS SDVLYHQTVL  120
GAHNTIGQTE AWYSTNSLAK RPRFDSASNL PIYPQRPGEK DCAHYMLTRT CKFGDSCRFD  180
HPIWVPEGGI PDWKEVPPLA TTTESLPERP GMPDCPFFLK TQRCKFGLRC KFNHPKDKLV  240
TEVAAENAGL SALPERPSEP PCAFYMKTGK CKFGPTCKFN HPKDIQIPLL GQENGNGEQT  300
ELTIKALATA DAILANSLAS YTPALIYNSK GLPVRPGEAD CPFYLKTGSC KYGATCRYNH  360
PDRHAINPPA AAIGLPIVAS PATNLNIGVV NPAASIYQTI DPRLAQPT
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818004e-92LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132554e-92LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023903185.10.0zinc finger CCCH domain-containing protein 37-like isoform X1
SwissprotQ941Q31e-136C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2I4FFL60.0A0A2I4FFL6_JUGRE; zinc finger CCCH domain-containing protein 37 isoform X1
TrEMBLA0A2N9H9N50.0A0A2N9H9N5_FAGSY; Uncharacterized protein
STRINGXP_010260864.11e-172(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-133floral homeotic protein (HUA1)