PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold07098-snap-gene-0.18-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 19769 Da PI: 10.0979 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3.1e-13 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT eE+e l +v+++G+g Wk I r R+ ++k++w++ maker-scaffold07098-snap-gene-0.18-mRNA-1 5 KQKWTSEEEEALRAGVAKHGTGKWKDIQRDPEfnpflSSRSNIDLKDKWRN 55 79***********************************9************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.994 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.66E-17 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-9 | 5 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-15 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 4.32E-23 | 6 | 56 | No hit | No description |
SuperFamily | SSF46785 | 7.07E-12 | 116 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 4.8E-12 | 116 | 177 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 19.383 | 118 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 3.5E-11 | 119 | 178 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 4.3E-9 | 121 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MGNPKQKWTS EEEEALRAGV AKHGTGKWKD IQRDPEFNPF LSSRSNIDLK DKWRNMSVSA 60 GGQGPREKSR SSKAKANPDT PTTTPSSVQT SVAASVAHDT AADPNVDDST KSLTDGKNAS 120 SYNAMIFEAL STLNEPNGLD TSKIVSFIEQ RHEVPQNFRR LLSTRLRRLV TQDKLEKVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023890120.1 | 1e-128 | single myb histone 4-like | ||||
Swissprot | Q8W119 | 2e-54 | SMH4_MAIZE; Single myb histone 4 | ||||
TrEMBL | A0A2P5ASI4 | 3e-95 | A0A2P5ASI4_PARAD; Telomeric repeat-binding factor | ||||
STRING | XP_010090083.1 | 2e-88 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3228 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 3e-50 | MYB_related family protein |
Publications ? help Back to Top | |||
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