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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold07067-augustus-gene-0.6-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NAC | ||||||||
Protein Properties | Length: 705aa MW: 80076.1 Da PI: 5.1505 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115 | 7.7e-36 | 9 | 172 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................ 49 lppG+rF+P+d+e++ yLkkk++g++ ++ +i+e++ yk ePwdLp+ maker-scaffold07067-augustus-gene-0.6-mRNA-1 9 LPPGVRFSPKDKEVIELYLKKKITGNDKDT-WFIPEIEFYKDEPWDLPSnllvfllshthlhfle 72 79*************************888.78***************5599************* PP NAM 50 ........kvkaeekewyfFskrdkkya...........tgkrknratksgyWkatgkdkevlsk 95 +++e++ew+fF++++ k++ +++r +r+tk gyWk+tg+d+e++s maker-scaffold07067-augustus-gene-0.6-mRNA-1 73 nlmpffksGIATEDQEWFFFTEQSLKHQddnpkkrkrdqKQERVSRKTKVGYWKSTGTDREIKS- 136 999999886777999*******9999994444433333233355555*****************. PP NAM 96 kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 +++l+g+kktLvf+ ++ ++kg t+Wvmhey+ maker-scaffold07067-augustus-gene-0.6-mRNA-1 137 GESLIGMKKTLVFHignTKGREKGIGTKWVMHEYST 172 999***********665445678899********85 PP | |||||||
2 | NAM | 121.3 | 8.9e-38 | 545 | 686 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFsk 63 lppG+rF+P+d e++ yLkkk++g++ ++ +i+e++ yk ePwdLp k ++++++ew+fF++ maker-scaffold07067-augustus-gene-0.6-mRNA-1 545 LPPGVRFSPKDPEVIELYLKKKITGHDEDT-WFIPEIEFYKDEPWDLPiKsGIATKDQEWFFFTE 608 79*************************888.78**************96346777999******* PP NAM 64 rdkkyatgkrknra...........tksgyWkatgkdkevlskkgelvglkktLvfy...kgrap 114 ++ k+++++ k+r+ tk+g+Wk+tg d+e+ +++l+g+kktLvf+ +++++ maker-scaffold07067-augustus-gene-0.6-mRNA-1 609 QSLKHQNDNPKKRKrgqkqelvnrqTKAGFWKSTGPDREIEF-GESLIGMKKTLVFHirsNKKEE 672 *****98887777667888888888****************9.999***********88767899 PP NAM 115 kgektdWvmheyrl 128 k+++t+Wvmheyr maker-scaffold07067-augustus-gene-0.6-mRNA-1 673 KARRTNWVMHEYRT 686 999*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-35 | 6 | 202 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.942 | 9 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-22 | 10 | 171 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.26E-38 | 540 | 691 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.942 | 545 | 705 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-22 | 546 | 685 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MEKLSLDHLP PGVRFSPKDK EVIELYLKKK ITGNDKDTWF IPEIEFYKDE PWDLPSNLLV 60 FLLSHTHLHF LENLMPFFKS GIATEDQEWF FFTEQSLKHQ DDNPKKRKRD QKQERVSRKT 120 KVGYWKSTGT DREIKSGESL IGMKKTLVFH IGNTKGREKG IGTKWVMHEY STTQKDFDGK 180 HPGQIVLPPK SSEKAFVLCR LFDNQEKSTN GGPAASLDTT SCIEETKSKL SVAPVSPALD 240 VQAETPQTSN QSCYAKIPDE MLSDATAPVQ CENASVAEKL EAEMTSSEDE FNVEEFLNNL 300 SPSAFDFYVD KMMSDAPAPI QFENDNFNSE VDQDLEKAPK MFYPHPPEPL DCNFSSVSTI 360 TTATPAVSSP TTAKASLEEA QSMLAPASVS PKLGSEADNY PMSFQCCPAE NSDGIASSSI 420 PPIKYNGYNT CAAKNDVVEK TSDEMQADDC FRYKSSSQNN LAFDDETQEN MVSAQFDQEY 480 QDLLWLEDII KSPKDSPGLY ESGSEGGIVT FRILIKILAT PRLCYRVKQV QSSLLLMEKL 540 SLDHLPPGVR FSPKDPEVIE LYLKKKITGH DEDTWFIPEI EFYKDEPWDL PIKSGIATKD 600 QEWFFFTEQS LKHQNDNPKK RKRGQKQELV NRQTKAGFWK STGPDREIEF GESLIGMKKT 660 LVFHIRSNKK EEKARRTNWV MHEYRTTQKE FDGKHPGQVG FCNSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-24 | 9 | 688 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-24 | 9 | 688 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-24 | 9 | 688 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-24 | 9 | 688 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-24 | 9 | 688 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-24 | 9 | 688 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-24 | 9 | 688 | 17 | 169 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023913059.1 | 0.0 | protein NTM1-like 9 isoform X2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 1e-39 | NAC domain containing protein 62 |