PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07041-snap-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 339aa    MW: 38487.1 Da    PI: 5.0358
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07041-snap-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151461148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              +g+WT+eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
  maker-scaffold07041-snap-gene-0.3-mRNA-1 14 KGPWTAEEDKKLINFILNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                                              79******************************99************97 PP
2Myb_DNA-binding43.95.3e-1471144547
                                               -HHHHHHHHHHHHHTTTT................................-HHHHHHHHTTTS-HHHHH CS
                           Myb_DNA-binding   5 TteEdellvdavkqlGgg................................tWktIartmgkgRtlkqck 41 
                                               ++ E++  +d+++qlG++                                +W++Ia++++ gRt++++k
  maker-scaffold07041-snap-gene-0.3-mRNA-1  71 SECEEKMVIDLHAQLGNRilghthsymnlsaglksnfyysevqniflafcRWSKIASHLP-GRTDNEIK 138
                                               5669********************************************************.******** PP

                                               HHHHHH CS
                           Myb_DNA-binding  42 srwqky 47 
                                               ++w+++
  maker-scaffold07041-snap-gene-0.3-mRNA-1 139 NHWNTH 144
                                               ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-21563IPR009057Homeodomain-like
PROSITE profilePS5129419.945965IPR017930Myb domain
SMARTSM007177.8E-121363IPR001005SANT/Myb domain
SuperFamilySSF466898.64E-231465IPR009057Homeodomain-like
PfamPF002492.5E-141461IPR001005SANT/Myb domain
CDDcd001671.25E-81661No hitNo description
Gene3DG3DSA:1.10.10.604.0E-206487IPR009057Homeodomain-like
SMARTSM007178.2E-966147IPR001005SANT/Myb domain
PfamPF002491.6E-1071144IPR001005SANT/Myb domain
PROSITE profilePS512948.44399149IPR017930Myb domain
SuperFamilySSF466898.64E-23113146IPR009057Homeodomain-like
CDDcd001674.04E-7121145No hitNo description
Gene3DG3DSA:1.10.10.604.0E-20121150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDKKLINFIL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SECEEKMVID LHAQLGNRIL GHTHSYMNLS AGLKSNFYYS EVQNIFLAFC  120
RWSKIASHLP GRTDNEIKNH WNTHIKKKLK KMGIDPLTHK PISSATDEPQ TQQQQEQLQH  180
QKEEEQKQQE ASPTDTVSEI DQSKELETET SLQSSSIPEA KEEDKSMTSP FDPMELMNGF  240
CIDEVPIIEP HEILVQCAPS SSTSTSSSTS SNSSNFFQDL QLPDFEWPCD YNNSSNNSVG  300
LWDDDLSSWD LLINDDGDRK QTGNPSLSQC PRMVLDQEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-21121495108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2796129e-90AB279612.1 Nicotiana tabacum NtMYBGR1 mRNA for MYB-related transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023887547.10.0transcription factor MYB20-like isoform X1
RefseqXP_023887548.10.0transcription factor MYB20-like isoform X2
SwissprotQ9C7U77e-92MYB20_ARATH; Transcription factor MYB20
TrEMBLA0A2N9HT741e-161A0A2N9HT74_FAGSY; Uncharacterized protein
STRINGEOY038981e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65334142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.17e-83myb domain protein 20
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]