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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
maker-scaffold07005-augustus-gene-0.14-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 267aa MW: 30423.8 Da PI: 8.5803 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold07005-augustus-gene-0.14-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 38.4 | 2.3e-12 | 20 | 105 | 8 | 99 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71
++ ++ l++p kf++++g + s+ tl + g +W+v l k + +++ +G ++F +
maker-scaffold07005-augustus-gene-0.14-mRNA-1 20 LSTIENMKLSIPPKFVKDFGDE--ISTLATLSVSCGGTWKVGL--LKAEKNIWFCDGLEDFFEY 79
56777888********999865..8889***************..999999************* PP
HT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 72 ngLkegDfvvFkldgrsefelvvkvfrk 99
+ + +g +vF+++g+s+f +v +f+k
maker-scaffold07005-augustus-gene-0.14-mRNA-1 80 HSISAGHLLVFRYEGHSNF--HVIIFDK 105
**************99999..**99998 PP
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2 | B3 | 51.2 | 2.2e-16 | 167 | 260 | 3 | 98 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH CS
B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGW 65
+vl ++++ + + +++pk fa++h ++ + l+++ ++W+v++ +++ +s+++ l+ GW
maker-scaffold07005-augustus-gene-0.14-mRNA-1 167 TVL-QPYNIRFKYVYVPKGFANKHVAW---NQFVNLQTSGKKQWRVRCySHTSTSSAMRLGMGW 226
444.7788888889*******999433...2369**************333777777******* PP
HHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
B3 66 keFvkangLkegDfvvFkldgr.sefelvvkvfr 98
F ++n L+egD++vF+++++ + ++v++fr
maker-scaffold07005-augustus-gene-0.14-mRNA-1 227 AAFSRDNYLEEGDVCVFEVIKTsPTILMRVSIFR 260
******************9998677777777777 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MVPKAKNNSP PSHFFKIILL STIENMKLSI PPKFVKDFGD EISTLATLSV SCGGTWKVGL 60 LKAEKNIWFC DGLEDFFEYH SISAGHLLVF RYEGHSNFHV IIFDKTATET QYPSSKNAIL 120 EEPEDVVELD ESEMSRQDMQ PPNTSSKGRE RAFQAAKMSM PKSAFLTVLQ PYNIRFKYVY 180 VPKGFANKHV AWNQFVNLQT SGKKQWRVRC YSHTSTSSAM RLGMGWAAFS RDNYLEEGDV 240 CVFEVIKTSP TILMRVSIFR VQDYAVN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-16 | 143 | 264 | 26 | 145 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-16 | 143 | 264 | 26 | 145 | B3 domain-containing transcription factor VRN1 |