PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold06955-augustus-gene-0.10-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 146aa MW: 15924.4 Da PI: 7.3911 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.5e-11 | 42 | 60 | 8 | 26 |
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+++tG+Ck+G++CkF+H+ maker-scaffold06955-augustus-gene-0.10-mRNA-1 42 FYMKTGECKFGENCKFHHP 60 9*****************8 PP | |||||||
2 | zf-CCCH | 44 | 3.8e-14 | 91 | 114 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +lC+++++tGtCk+G++CkF H+p maker-scaffold06955-augustus-gene-0.10-mRNA-1 91 VLCPYYLKTGTCKFGATCKFDHPP 114 79********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.53 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.084 | 42 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.6E-9 | 42 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 42 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-5 | 42 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-8 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.305 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-11 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-7 | 92 | 112 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
MSILCLVHTG SGQTLDPISS SLHMPCLKAV LSSLQISYFQ SFYMKTGECK FGENCKFHHP 60 IDRSAPSLLK QAQQQAVKLT LAGLPRREGA VLCPYYLKTG TCKFGATCKF DHPPPGEVMA 120 MATSQGTSAA VEGDEKEVEL LQEQQQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023903185.1 | 3e-67 | zinc finger CCCH domain-containing protein 37-like isoform X1 | ||||
Refseq | XP_023903186.1 | 1e-68 | zinc finger CCCH domain-containing protein 37-like isoform X2 | ||||
Swissprot | Q941Q3 | 4e-39 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2N9H9N5 | 6e-57 | A0A2N9H9N5_FAGSY; Uncharacterized protein | ||||
STRING | XP_010260864.1 | 1e-48 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7558 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 9e-35 | floral homeotic protein (HUA1) |