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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold06912-snap-gene-0.15-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
B3 |
Protein Properties |
Length: 418aa MW: 48161.7 Da PI: 9.028 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold06912-snap-gene-0.15-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 51.7 | 1.5e-16 | 6 | 96 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71
f +l+ s + +s++l++p kf+ + + s +tl ++g +W+v l +k +++ ++ +GW++Fv+
maker-scaffold06912-snap-gene-0.15-mRNA-1 6 FHKLILSTTIQSKQLRIPEKFVMKVRDD--LSPVVTLSVPDGHVWQVGL--KKVDSSAWFHNGWQDFVEH 71
5567788999999*********999655..5668***************..999999************* PP
HT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 72 ngLkegDfvvFkldgrsefelvvkvfr 98
+++g f+vF+++g+s+f +v++f+
maker-scaffold06912-snap-gene-0.15-mRNA-1 72 YSIRVGYFLVFRYEGNSSF--FVHIFN 96
****************999..999986 PP
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2 | B3 | 56.3 | 5.7e-18 | 303 | 384 | 4 | 89 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHH CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvk 70
vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF
maker-scaffold06912-snap-gene-0.15-mRNA-1 303 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTSEGRQWPVRCLYRGGR--AKLSQGWYEFSL 365
78899******************866743...5***************665555..66********** PP
HHT--TT-EEEEEE-SSSE CS
B3 71 angLkegDfvvFkldgrse 89
+n+L egD++vF+l + +e
maker-scaffold06912-snap-gene-0.15-mRNA-1 366 ENNLGEGDVCVFELLKMRE 384
*************876444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 418 aa
Download sequence Send
to blast |
MPRPYFHKLI LSTTIQSKQL RIPEKFVMKV RDDLSPVVTL SVPDGHVWQV GLKKVDSSAW 60 FHNGWQDFVE HYSIRVGYFL VFRYEGNSSF FVHIFNLANS EVNYQNNTPG GPQGISYASH 120 YRVFEEMEDD DFTEILSSTP TTESLKNKLF GERGDLLTPN KSYNPPSLQN LFNGSKLKNC 180 LNWAGDGNMH PSKGVDKSPS EIHHTREIGV QFNATELKKS LDEVKLQSAD QEIQKLKKTM 240 RKKRKNDPNE QESSARHEEE IDMRFRFYES ASARKRTVTA EERERAINAA KAFEPTNPFC 300 RVVLRPSYLY RGCIMYLPSC FAEKNLSGVS GFIKLQTSEG RQWPVRCLYR GGRAKLSQGW 360 YEFSLENNLG EGDVCVFELL KMREIVLKVT TYRVLDDNGL VVNQPLMQHV NHLKLIRN
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 2e-73 | 266 | 394 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-73 | 266 | 394 | 15 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 235 | 244 | LKKTMRKKRK |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |