PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold06695-snap-gene-0.15-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TALE | ||||||||
Protein Properties | Length: 683aa MW: 75087.2 Da PI: 6.0483 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 426 | 463 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + maker-scaffold06695-snap-gene-0.15-mRNA-1 426 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 463 664459******************************88 PP | |||||||
2 | BELL | 127.2 | 5.8e-41 | 288 | 359 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdai 68 e+q+lq+k +kLls+ +eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai maker-scaffold06695-snap-gene-0.15-mRNA-1 288 EKQDLQNKLTKLLSMSDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAI 355 6899**************************************************************** PP BELL 69 aeqi 72 ++qi maker-scaffold06695-snap-gene-0.15-mRNA-1 356 TGQI 359 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.9E-61 | 207 | 357 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-49 | 213 | 356 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 404 | 467 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 407 | 471 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.49E-13 | 407 | 468 | No hit | No description |
SuperFamily | SSF46689 | 2.31E-17 | 408 | 475 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-29 | 410 | 473 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 424 | 463 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MATFYTSSNN QRDSAPMLYL REHLPSSYAE APVIPGNMMM YMNSGPYSDA LAGSSQQQNN 60 CMEISSLGAS NSTPQQQEIL SNLGGPRIAE HDFNAWREAR NEMLVTHPMG GATSILHSGQ 120 NLQGQGLSLS LSTQMPSGIQ MSSIPYRNPN PGFASFLSPN SSISGDSGDR NGSSRDEQLR 180 NAEYLPPGFP GGNQDLNKGD SSPYGMPSIV RNVPNSKYLK VAQQLLDEVV NVRKALKEAD 240 MKNESTYEKN SKEGDGGSKN ENALPPSGVS SNPQESAGNS PCELSNAEKQ DLQNKLTKLL 300 SMSDEVDRRY KQYYHQMQIV VSSFDVIAGC GAAKPYTALA LQTISRHFRC LRDAITGQIR 360 ATRKSLGEQD TSGSSRGVGI TRLRYVDQQL RQQRALQQLG MMQQHAWRPQ RGLPESSVSI 420 LRAWLFEHFL HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEETGDM 480 EMDSNSSSEN AVKATKGDNR TSEERGEDLQ QSASSTATER CSTGQLTDSK PNHVPDVEMA 540 GSSVINFHNG SRGEAENEYG LVKRREEQRP NVDDCSLFPD AMMQSDAASE RFMAAAAAYH 600 MSELGRFGSG SGVSLTLGLQ HCEDGSLPMS SGNHHSFMSM RGDEIYSAAA SSVGPETADY 660 ECMNPGNQQH RFSSSHLLHD FVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 413 | 470 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 413 | 470 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023920729.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
Refseq | XP_023920730.1 | 0.0 | BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A2N9IZ56 | 0.0 | A0A2N9IZ56_FAGSY; Uncharacterized protein | ||||
STRING | XP_006487349.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-126 | BEL1-like homeodomain 6 |