PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GATA

Protein Properties

Length: 329aa MW: 34858.5 Da PI: 4.9466

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold06619-snap-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.4e-16	229	265	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ maker-scaffold06619-snap-gene-0.10-mRNA-1 229 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 265 *****99***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.942	89	124	IPR010399	Tify domain
SMART	SM00979	4.2E-7	89	124	IPR010399	Tify domain
Pfam	PF06200	3.2E-10	92	123	IPR010399	Tify domain
PROSITE profile	PS51017	12.709	157	199	IPR010402	CCT domain
Pfam	PF06203	9.0E-15	157	199	IPR010402	CCT domain
SMART	SM00401	5.6E-9	223	276	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	8.51	223	271	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.9E-11	224	273	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-14	227	270	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.77E-15	228	278	No hit	No description
Pfam	PF00320	6.2E-14	229	265	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	229	256	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MAAANPQPLQ ARPYGDHVAV RGPIPLEDDD EGEYEDGGGG GGGGGGDDAM DDLEDAHVNS 60 VSVAEYGVGV GVGVGGGGGG GGVGGGVVMA SRTSELTLSF EGEVYVFPAV TPEKVQAVLL 120 LLGGRDVPTG VPTIEVPFNQ NNRGVGETPK RSNLSRRIAS LVRFREKRKE RCFDKKIRYT 180 VRKEVAQRMH RKNGQFASVK ENSGASSWDS PQSCPQDGTP RPESVLRRCQ HCGVSENNTP 240 AMRRGPAGPR TLCNACGLMW ANKGTLRDLS KGGRNVSMDH VEPETPVDVK PSITDGEFCG 300 NQDEQEAPED SSKPVTEGTN KSTVNPDEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	151	ETPKRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891083.1	0.0	GATA transcription factor 24-like isoform X3
Swissprot	Q8GXL7	3e-70	GAT24_ARATH; GATA transcription factor 24
TrEMBL	A0A2I4HT19	1e-172	A0A2I4HT19_JUGRE; GATA transcription factor 24-like
STRING	XP_008219237.1	1e-167	(Prunus mume)
STRING	EMJ28669	1e-167	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3319	33	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	1e-74	ZIM-like 1

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376]