PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold06601-snap-gene-0.7-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | AP2 | ||||||||
Protein Properties | Length: 685aa MW: 75820.7 Da PI: 6.9782 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.9 | 2.1e-12 | 323 | 379 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g maker-scaffold06601-snap-gene-0.7-mRNA-1 323 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 379 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 45.6 | 1.8e-14 | 424 | 473 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g maker-scaffold06601-snap-gene-0.7-mRNA-1 424 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 473 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-9 | 323 | 379 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.57E-19 | 323 | 387 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-14 | 323 | 389 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.359 | 324 | 387 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-23 | 324 | 393 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-12 | 324 | 388 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 325 | 336 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.29E-17 | 422 | 482 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.51E-24 | 422 | 483 | No hit | No description |
SMART | SM00380 | 1.2E-33 | 423 | 487 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 423 | 481 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-18 | 423 | 481 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 424 | 473 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.5E-6 | 463 | 483 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 685 aa Download sequence Send to blast |
MKSMNDNSGS NNNWLGFSLS PHMKMEVPSD PQQQHQYHHH QQGQASSAAV SSAPPSTSYY 60 LNTPAGICYL VGENAGFHSP LSVMPLKSDG SLCIMEALTR SQPEGMVPSS SPKLEDFLGG 120 ASMGTHEYGT HEREAMALSL DSIYYNQNAE AETNREHSLG LLQEPYRQQE QHIPVQTHPY 180 YTGLHCHGIY QTPLEDESKQ THIADCDSQI PHMAEDGIPS FKNWVARQYS AAHHALEQQM 240 NGNIADDNGA SASVNAMGCG DLQSLSLSMS PGSQSSCVTA PRQISPTGAE CVAIETKKRG 300 PGKVGHKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QTRKGRQGGY 360 DMEEKAARAY DLAALKYWGP STHINFPLEN YQSELEEMKN MSRQEYVAHL RRKSSGFSRG 420 ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGVNAVTNF 480 DITRYDVERI MASNTLLAGE LARRNKDTDS RTEAIDYNPP MHNGGEANQT ENGNGNGNSS 540 DWKMALYQST QQQQQQQQQQ HPHPHACVES LDHQKSVNYR NPSFSMALQD LIGIDSVNSS 600 QAMVDDSSKF ATHFSNPSSL VTSLSSSREP SPDKTGSTML FAKPPSASKF ISPANGVSSW 660 FQSPQLRPTA ISMSHLPVFA AWTDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023872648.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-152 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2N9F1V1 | 0.0 | A0A2N9F1V1_FAGSY; Uncharacterized protein | ||||
STRING | EOY15653 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-125 | AP2 family protein |
Publications ? help Back to Top | |||
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