PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06503-snap-gene-0.17-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARF
Protein Properties Length: 670aa    MW: 73331.6 Da    PI: 7.4996
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06503-snap-gene-0.17-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-23114215199
                                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvl 61 
                                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++l
  maker-scaffold06503-snap-gene-0.17-mRNA-1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLL 179
                                                89****************************997556555..8************************** PP

                                                -TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3  62 tkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                t+GW+ Fv++++L +gD++vF   + +++ l+v+++r+
  maker-scaffold06503-snap-gene-0.17-mRNA-1 180 TTGWSTFVNQKKLVAGDSIVFL--RAENGDLCVGIRRA 215
                                                **********************..4488999****997 PP
2Auxin_resp116.52.3e-38279362183
                                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvs 67 
                                                aa  a+++++FevvY+Prast+eF+vk++ v+++++++++ GmRfkmafetedss++++ +Gt+++v+
  maker-scaffold06503-snap-gene-0.17-mRNA-1 279 AAALAASGQPFEVVYYPRASTPEFCVKASAVKATMRTQWCSGMRFKMAFETEDSSRISWfMGTIASVQ 346
                                                678899************************************************************** PP

                                 Auxin_resp  68 dldpvrWpnSkWrsLk 83 
                                                 +dp+rWpnS+Wr+L+
  maker-scaffold06503-snap-gene-0.17-mRNA-1 347 VADPLRWPNSPWRLLQ 362
                                                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-37106218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-28111217IPR015300DNA-binding pseudobarrel domain
CDDcd100178.22E-22113214No hitNo description
PROSITE profilePS5086313.028114216IPR003340B3 DNA binding domain
PfamPF023628.0E-22114215IPR003340B3 DNA binding domain
SMARTSM010191.8E-22114216IPR003340B3 DNA binding domain
PfamPF065073.9E-33279362IPR010525Auxin response factor
PROSITE profilePS5174518.179558636IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MKESEKSLDP QLWHACAGGM VQMPQVNSKV FYFPQGHAEH AQVHVDFSSL PRIPALIPCR  60
VGAVKFLADP ETDEVFSKIR LVPLGNRNIG ELDFEDDGVV GANGSENPEK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYTADPP VQTVIAKDVH GEVWKFRHIY RGTPRRHLLT  180
TGWSTFVNQK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GALESPSGWN PGPGNSVSSY  240
GGFSMFLREQ ENKVMRNSGP AGGNLSGKGK VMPESVIEAA ALAASGQPFE VVYYPRASTP  300
EFCVKASAVK ATMRTQWCSG MRFKMAFETE DSSRISWFMG TIASVQVADP LRWPNSPWRL  360
LQVSCSPLIC IPLCKNLDSV GNPLGSSSPL CFLSDNTPAG IQGARHAQFG ISLSDLHFNN  420
KLQPGLFPSN FQRYNMNPRT SNSIMTSNTN SNENISCLLT IGNSSQNLEK SDNVKRHQFL  480
LFGQPIITEQ QISRSCSSDT VSQVLTGKSS IDENQDKVKF LSDGSGSTLD QQVSPEKSSS  540
TGFSWHQSFQ TTELGLDTGH CKVFMESEDV GRTLDLSVLG SYEELHRRLA NMFGIERSDM  600
LNHVVYRDAT GAVKQTGDEP FSDFMKTAKR LTIFNVSSSN NIGRTWITGM RNTENGLDAS  660
NKTGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-73836351368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2N9HWN20.0A0A2N9HWN2_FAGSY; Auxin response factor
STRINGVIT_06s0004g02750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]