PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06487-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 553aa    MW: 62258.1 Da    PI: 6.0922
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06487-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09289343755
                                                HHHHHHHHHHHHHHHHHHCTSCC.C........TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   7 erErrRRdriNsafeeLrellPk.as.....kapskKlsKaeiLekAveYIksLq 55 
                                                 +ErrRR+++N+++  Lr l+Pk +            l+ a+iL  A+e++k+Lq
  maker-scaffold06487-snap-gene-0.15-mRNA-1 289 VAERRRRKKLNDRLYALRALVPKiSKilkslMLLLVQLDRASILGDAIEFVKELQ 343
                                                68*********************66599999777789*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-10483IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.43282342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-13284356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.90E-11284345No hitNo description
Gene3DG3DSA:4.10.280.101.4E-13287356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-10288348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7289343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.07E-4443506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MFQHPRTKAC DLLAQLPSSM PLDSGIYAQA LISNQPSWLN FSNNTESAET VGTRVLIPLP  60
GGVIELFASK QVAEDQNVID LITAQCNISL QQQEDLINSS NMSNSFSSNV NAMKADFHSK  120
LILVDDHYQK DPNSHFQPSV SPATPLENMN VQYDISVDRI RQCDSQMNFL QQFNYTPEDR  180
TKSDVYYEGA VHNSFISDKP TNPFKSSAEN GHQEIDVLQQ SMMNNSSNMH MQFMEPLSNK  240
EQQGNDKDSI KPETGRTDSI SDCSDQFDDE DDAKYRRRTG KGPQSKNLVA ERRRRKKLND  300
RLYALRALVP KISKILKSLM LLLVQLDRAS ILGDAIEFVK ELQKQAKELQ DELEEHSDDE  360
AGRNTVPNNG NHQNVQPEIL TTNRMILGPK TEHEKPSNGI HEGGSGNGNA LKQNQDSDSI  420
SDKAQQMEVQ VEVAQIDGNE FFVKVFCEHK PGGFVRLMEA LNSLGLEVTN ANVTSFRGLV  480
SNVFKVQKRD SEIVQADHVR DSLLELTRNP SRGWPEMAKA SENGGGTDYH HNHHHLHNHH  540
ASSYHHHLHH LHN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275296RRRTGKGPQSKNLVAERRRRKK
2290297ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876341.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2N9FM070.0A0A2N9FM07_FAGSY; Uncharacterized protein
STRINGVIT_01s0127g00860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-113bHLH family protein