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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold06450-augustus-gene-0.17-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
NAC |
Protein Properties |
Length: 254aa MW: 28858.4 Da PI: 9.5594 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold06450-augustus-gene-0.17-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 166 | 1.3e-51 | 14 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64
lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+evd++k++PwdLp e+e y+Fs+r
maker-scaffold06450-augustus-gene-0.17-mRNA-1 14 LPPGFRFHPTDEELVVQYLKRKVFSYPLPA-SIIPEVDVCKFDPWDLPGD---LEQERYYFSTR 73
79****************************.89***************54...46799****** PP
NAM 65 dkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
+ ky++g+r+nrat sgyWkatg dk+++++ ++++vg+kktLvfy+g+ p+g++tdW+mheyr
maker-scaffold06450-augustus-gene-0.17-mRNA-1 74 EAKYPNGNRSNRATGSGYWKATGIDKQIVTSrGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYR 137
***************************999857778***************************9 PP
NAM 128 l 128
+
maker-scaffold06450-augustus-gene-0.17-mRNA-1 138 F 138
6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 254 aa
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to blast |
MEKLNFVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVFSYP LPASIIPEVD VCKFDPWDLP 60 GDLEQERYYF STREAKYPNG NRSNRATGSG YWKATGIDKQ IVTSRGNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRFVT AETSPSNAPQ KKTSTESSVV PMENWVLCRI FLKKRSNKSE 180 DDNVQTGNEN TVGKLRTTKP VFYDFMTKGR TDLNVAPASS SSGSSGITEV SSNESDDHEE 240 SSSCNSFPYF RRKP
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 8e-54 | 12 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-54 | 12 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-54 | 12 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-54 | 12 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-54 | 12 | 178 | 18 | 173 | NAC domain-containing protein 19 |
4dul_A | 8e-54 | 12 | 178 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 8e-54 | 12 | 178 | 15 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |