PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

MYB_related

Protein Properties

Length: 97aa MW: 10965.2 Da PI: 8.9267

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold06019-augustus-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.7	3.5e-10	10	55	2	45
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 ++WT+ E + + +a + + ++ +W+ +a+ +g g+t++++k ++ maker-scaffold06019-augustus-gene-0.9-mRNA-1 10 DSWTAKENKAFERALAVYDKDtpdRWHNVAKAVG-GKTPEEVKRHYE 55 58******************************.********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	12.545	7	62	IPR017884	SANT domain
SMART	SM00717	5.0E-10	8	60	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.18E-14	11	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-6	11	64	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-8	11	55	IPR001005	SANT/Myb domain
CDD	cd00167	6.79E-8	12	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009630	Biological Process	gravitropism
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010114	Biological Process	response to red light
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 97 aa Download sequence Send to blast
MASSSMSSSD SWTAKENKAF ERALAVYDKD TPDRWHNVAK AVGGKTPEEV KRHYELLVED 60 VKHIESGQVP FPKYKTTGGS SQANTDEEKR MRNLKLH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-44	3	97	2	93	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023927213.1	8e-58	protein RADIALIS-like 3
Swissprot	Q58FS3	5e-44	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A2P5CA43	3e-52	A0A2P5CA43_PARAD; Octamer-binding transcription factor
STRING	XP_010088924.1	1e-52	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF154	34	280

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39250.1	3e-43	RAD-like 1

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]