PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05899-augustus-gene-0.11-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 293aa    MW: 33042.3 Da    PI: 6.7067
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05899-augustus-gene-0.11-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072422752154
                                                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                    k +yp+++++++L +++gL+ +q+ +WF N+R +
  maker-scaffold05899-augustus-gene-0.11-mRNA-1 242 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 275
                                                    469*****************************87 PP
2ELK24.27.6e-09196217122
                                            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                                    ELK +L++++++++ ++++E++
  maker-scaffold05899-augustus-gene-0.11-mRNA-1 196 ELKIELKQGFKSKIEDVREEIL 217
                                                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-193074IPR005540KNOX1
PfamPF037901.9E-173273IPR005540KNOX1
SMARTSM012567.0E-2485140IPR005541KNOX2
PfamPF037913.9E-1789139IPR005541KNOX2
PROSITE profilePS512139.045196216IPR005539ELK domain
PROSITE profilePS5007111.677216279IPR001356Homeobox domain
SuperFamilySSF466893.85E-16218283IPR009057Homeodomain-like
SMARTSM003891.4E-10218283IPR001356Homeobox domain
CDDcd000862.34E-11219280No hitNo description
Gene3DG3DSA:1.10.10.606.8E-25223281IPR009057Homeodomain-like
PfamPF059209.8E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQEPNLGMIG GGGSSGGLSG EVAISGDHLR QLKAEIATHP LYEQLLNAHV SCLRVATPID  60
QLPLIDAQLA QSHHLLRSYA SQHSHSLPPH ERQELDNFLA QYLLVLCSFK EQLQQHVRVH  120
AVEAVVACRE IENTLQALTG VSLSEGTGAT MSDDEDDLQM DFSLDQSGGD GHDMMGFGPL  180
LPTESERSLM ERVRQELKIE LKQGFKSKIE DVREEILRKR RAGKLPGDTT TVLKNWWQQH  240
SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12219275864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272292RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876848.10.0homeobox protein HD1
SwissprotQ9FPQ81e-170KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1S3VSB70.0A0A1S3VSB7_VIGRR; homeobox protein HD1
TrEMBLA0A2I4ELJ90.0A0A2I4ELJ9_JUGRE; homeobox protein HD1-like
STRINGEOY245900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-156KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]