PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05644-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 558aa    MW: 60661.5 Da    PI: 6.5283
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05644-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.3e-09370417455
                                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  maker-scaffold05644-snap-gene-0.15-mRNA-1 370 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 417
                                                8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17364435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-10364421No hitNo description
PROSITE profilePS5088815.663366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17366434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6370417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MEKENMTQPN WASSTFGMEI QPNELNYAPD QLTNCFFNPN WDNSVDQSDP FESALSSIVS  60
SPAASNAGAI PGGGGDGLMI RELIGKLGSI CNSGDISPQN YIAGHNNNNN STNTSCYSTP  120
LNSPPKLNLS MMDSQIRLNL PIPGNHPSLA PFSPDPGFAE RAARFSSFVS NTSCMGLNET  180
ELPYRLMPRV ESGKLSRAAS NQSLKLATGS QMGVQENNKS SPQEATLAAD KKLSRLSRSS  240
TPENAELGDS REGSSVSEQI PGGEVSNKVD TETNGRKRKS IPRGKAKETL SLTTPSAKDS  300
KAALDNDESN AKRSKQDEDA GNEKDTAKGK TEPKTTGNVN QKQNKDNSKP PEPPKDYIHV  360
RARRGQATDS HSLAERVRRE KISERMKFLQ DLVPGCNKVT GKAVMLDEII NYVQSLQRQV  420
EFLSMKLSTV NPRMDLNMDA LLSKDIFQSR GALPHTLYPI DSAMPAFPFG YQHQQVPSLH  480
GGIANGTENQ FLVNSLNAAQ RRNPSAQMPP IDGFGEATPE VSAPWEDDLQ SVVQMAFGQN  540
KQQSFHSSMA AAQMKVEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023927718.10.0transcription factor bHLH78-like isoform X2
TrEMBLA0A2N9GS130.0A0A2N9GS13_FAGSY; Uncharacterized protein
STRINGEOY050790.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-87bHLH family protein