PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05639-augustus-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 504aa    MW: 53330.6 Da    PI: 8.2655
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05639-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.5e-125277227
                                                  -S---SGGGGTS--TTTTT-SS-SSS CS
                                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                                                  +++ C +++rtG+C yG+rC+F+H++
  maker-scaffold05639-augustus-gene-0.8-mRNA-1 52 DEADCIYYLRTGFCGYGARCRFNHPR 77
                                                  6799********************96 PP
2zf-CCCH391.3e-1299123327
                                                   S---SGGGGTS--TTTTT-SS-SSS CS
                                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                                   ++ C++++rtGtCk+G++Ck++H++
  maker-scaffold05639-augustus-gene-0.8-mRNA-1  99 QPVCQYYMRTGTCKFGASCKYHHPR 123
                                                   689********************96 PP
3zf-CCCH35.91.2e-11144169227
                                                   -S---SGGGGTS--TTTTT-SS-SSS CS
                                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                                   ++++C+++ +tG+Ck+G++CkF+H++
  maker-scaffold05639-augustus-gene-0.8-mRNA-1 144 GEKECSYYVKTGQCKFGATCKFHHPQ 169
                                                   7899********************97 PP
4zf-CCCH36.39.3e-12328352226
                                                   -S---SGGGGTS--TTTTT-SS-SS CS
                                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                                   ++  C++++rtG Ck+G++C+++H+
  maker-scaffold05639-augustus-gene-0.8-mRNA-1 328 GQQDCPYYMRTGDCKFGSSCRYHHP 352
                                                   6789********************9 PP
5zf-CCCH31.13.9e-10375398326
                                                   S---SGGGGTS--TTTTT-SS-SS CS
                                       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                                    ++C ++a+ G Ck+G+ CkF H+
  maker-scaffold05639-augustus-gene-0.8-mRNA-1 375 APPCTHYAQRGVCKFGPVCKFDHP 398
                                                   689********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0515078IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-95277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-65379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55677IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-796123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90196124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-699124IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-1099123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5101123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009142170IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6142169IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9144169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6145170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4148168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089326354IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6326353IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9328352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5329354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4332352IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685372400IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6372399IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-7375398IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5376402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4377397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MERYGRHSDG PQPDPSQEWT APGTETGLEE PMWQLGLGGG GGGTESYPER PDEADCIYYL  60
RTGFCGYGAR CRFNHPRDRA AVIGAARAGG GEYPERVGQP VCQYYMRTGT CKFGASCKYH  120
HPRQGGESVT PVSLNYFGLP LRPGEKECSY YVKTGQCKFG ATCKFHHPQP AGLQAVSSLA  180
PQVAAVPTPV HAPTLYQSGQ SSSQQYGVVL ARPPLLSGSY VQNPYPPMIV SPGMVPFTGW  240
SHYPVGKASL TKLSNYVHFI EAVNHLVQPP PMSPVPSPST QSAVGSGQFY GITQLSPTAT  300
AYTYLPLPSS VGPSSSSQKE HPFPERPGQQ DCPYYMRTGD CKFGSSCRYH HPTEFIAPKT  360
NVALSPLGLP LRPGAPPCTH YAQRGVCKFG PVCKFDHPVG TLSYSPSASS LTDVPVAPYP  420
VGSSIGTLAP SSSSSELRPE LISGSSKDSV SSRMSSSMST SSGSIGSTFS QGGPTPHSTV  480
QQSAPGSGPS TGSSNGSTEP RTSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908938.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-164C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2N9IY820.0A0A2N9IY82_FAGSY; Uncharacterized protein
STRINGXP_004296815.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-132C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]