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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold05603-snap-gene-0.9-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 731aa MW: 80313.1 Da PI: 5.851 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.3e-20 | 61 | 116 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k maker-scaffold05603-snap-gene-0.9-mRNA-1 61 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 116 688999***********************************************998 PP | |||||||
2 | START | 205.5 | 2.1e-64 | 250 | 487 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHH CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlall 61 ela +a++elv++a+a+ep+Wv+s e++n++e+l++f+++ + ++ea+r+s+vv+m++ l maker-scaffold05603-snap-gene-0.9-mRNA-1 250 ELAVAAMEELVRMAQAGEPLWVSSDnstEILNEEEYLRTFPRGIGpkplgLKTEASRESAVVIMNHISL 318 57899*************************************999************************ PP HHHHCCCGGCT-TT-S....EEEEEEEECTT........................EEEEEEEEXXTTXX CS START 62 veellddkeqWdetla....kaetlevissg........................galqlmvaelqals 102 ve+l+d++ +W+ + +a+tlev+s+g +l +m+ae+q++s maker-scaffold05603-snap-gene-0.9-mRNA-1 319 VEILMDVN-RWSSVFCgivsRAMTLEVLSTGvagnyngalqvlvisaredmylinFVLLQMTAEFQVPS 386 ********.*****999999************************************************* PP -SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 103 plvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 plvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p + R++++pSg+li++++ng+ kv+wvehv maker-scaffold05603-snap-gene-0.9-mRNA-1 387 PLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYAKVVWVEHV 451 **********************************99....69*************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+++r+lv+sg+a+gak+w+atl+r ce+ maker-scaffold05603-snap-gene-0.9-mRNA-1 452 EVDDRAVHNIYRPLVNSGIAFGAKRWLATLDRKCER 487 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 43 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.97E-19 | 47 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.5E-19 | 59 | 122 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.3E-17 | 61 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.74E-19 | 61 | 119 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.99 | 241 | 490 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.92E-32 | 241 | 489 | No hit | No description |
CDD | cd08875 | 1.39E-123 | 245 | 486 | No hit | No description |
SMART | SM00234 | 5.1E-62 | 250 | 487 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-53 | 251 | 487 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.4E-4 | 387 | 485 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.23E-14 | 508 | 723 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MFQPDIFETH HHLLNMSHKS DDDDDDELGK LRDDDFETKS GTETMEAPSG DDQDPNQRPK 60 KKRYHRHTQR QIQEMEAFFK ECPHPDDKQR KELSRELGLE PLQVKFWFQN KRTQMKAQHE 120 RHENSILKSE NEKLRAENNR YKEALSNATC PNCGGPAALG EMSFDEQHLR IENARLREEI 180 DRISGIAAKY VGKPLTSYSH LSSHVPSRSL DLGVGNFGAQ SGFVGEMYGG NDLFRSITGP 240 TDADKPMIVE LAVAAMEELV RMAQAGEPLW VSSDNSTEIL NEEEYLRTFP RGIGPKPLGL 300 KTEASRESAV VIMNHISLVE ILMDVNRWSS VFCGIVSRAM TLEVLSTGVA GNYNGALQVL 360 VISAREDMYL INFVLLQMTA EFQVPSPLVP TRENYFVRYC KQHADGTWAV VDVSLDNLRP 420 SPISRSRRRP SGCLIQELPN GYAKVVWVEH VEVDDRAVHN IYRPLVNSGI AFGAKRWLAT 480 LDRKCERLAS SMANNIPAGD LCVITSAEGR KSMLKLAERM VVSFCTGVGA STAHAWTTLS 540 AAGSDDVRVM TRKSMDDPGR PPGIVLSAAT SFWIPVPPKR WDILSNGGLV QEMAHIANGR 600 DPGNSVSLLR SANSSQSNML ILQESCTDST GSYVIYAPVD IVAMNVVLSG GDPDYVALLP 660 SGFAILPDGP GLNGGGIVEV GSGGSLLTVA FQILVDSVPT AKLSLGSVAT VNSLIKCTVE 720 RIRAAVMCDN A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023904569.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like isoform X1 | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A2N9IRK2 | 0.0 | A0A2N9IRK2_FAGSY; Uncharacterized protein | ||||
STRING | EOY28624 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |