PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05584-snap-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 886aa    MW: 97507.1 Da    PI: 6.5042
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05584-snap-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR29.51.5e-094745011441
                                       TCR  14 lkkYCeCfaagkkCseeCkCedCkNkee 41 
                                               +k YC+Cfaag +C+e C C++C+Nk e
  maker-scaffold05584-snap-gene-0.8-mRNA-1 474 KKSYCDCFAAGLYCAEPCACQGCFNKPE 501
                                               599**********************976 PP
2TCR49.67.9e-16547585139
                                       TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                               ++k+gCnCkks ClkkYCeC++a++ Cs+ C+C++CkN 
  maker-scaffold05584-snap-gene-0.8-mRNA-1 547 RHKRGCNCKKSMCLKKYCECYQANVGCSSGCRCDGCKNV 585
                                               589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163429.784466587IPR005172CRC domain
SMARTSM011141.7E-4468502IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.3E-6475499IPR005172CRC domain
SMARTSM011141.6E-16547588IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-11549584IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MPREVSRIKV KVKVKESPCL FSDLSPIKPV KAAHVAQGFP GFNSPPLVFT SSRISSNSET  60
FLLKRPQDLL SSKEEISCND DKEKKSADDP GESKKSVTQL CRVFITDAHK DAEIKKYAQA  120
QPCSSSGCVD EYFADPVELD TVHSADSANA SLNQSSILPE SSATGLPASK NTIKFDDKND  180
MGKAAGTEVK APLILSKQAQ EDLHGKPAFD VKSLNSEEQQ RDGQWPTDVC PTIESDLSVD  240
HAFQRQQYED ASSQASENQR GLRRRCLQFE EALLNTNENS AGFLDPTNEV TTSRSPATVA  300
ELKSLESSHA DLIAASSRRQ VIQSRTNLYP PQYSGNSPLS ISKPSSIGLH LNSIVNAVPV  360
TCGATARLKL AEDYMGVQGM KSASVMNFHS LEKTKSCLIS SNVVEKIAFI AEDARYKIKS  420
SIAASSALCE SPHTTEPSNL LKPIEYDTTP HDKRKLNSEE VDSNEEYSQV SPKKKSYCDC  480
FAAGLYCAEP CACQGCFNKP EYEDTVLEIR QQIESRNPLA FAPKIVQHVT EFNNREDRNQ  540
VPPSSVRHKR GCNCKKSMCL KKYCECYQAN VGCSSGCRCD GCKNVYGKKE EMVRERAGEE  600
KFEGIYNEKL EMVATEEDFL QAELYDLHFT PLTPSFQCSS HGRAEQKSQL LSRRYLQSPE  660
SDLTILSSCA NNTKAPETLN SSDMLPQSKE SLNVGSYDWQ LDYNNMEVMD QFSPKGDAVA  720
NICHLTPLSD PPLTAMASSS SSKMREWKNT SPVQLSPGTG YVSSSGSLCW RSSPITPMSR  780
FGGTKSLQGL NPNSGFCDIL EEDTPEILKD CATPRNSVKI SCPNWKRVSP PKRHSRELGS  840
SSSGDLKSGR KFILQGVPSF PPLTPYIDSK GSTNQKASNN EDNNSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1347558523121Protein lin-54 homolog
5fd3_B1e-1347558523121Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915620.10.0CRC domain-containing protein TSO1-like isoform X1
TrEMBLA0A2N9F4E30.0A0A2N9F4E3_FAGSY; Uncharacterized protein
STRINGXP_008229954.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85652841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.15e-47Tesmin/TSO1-like CXC domain-containing protein