PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05396-augustus-gene-0.18-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 452aa    MW: 51820.6 Da    PI: 6.2945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05396-augustus-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.21.8e-18176222148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    +g WT eEd  l+++vkq+G + W+ Ia++++ gR +kqc++rw+++l
  maker-scaffold05396-augustus-gene-0.18-mRNA-1 176 KGQWTVEEDRHLIQLVKQYGVRKWSYIAQMLP-GRIGKQCRERWHNHL 222
                                                    799*****************************.*************97 PP
2Myb_DNA-binding56.37.6e-18228270145
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                    ++ W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
  maker-scaffold05396-augustus-gene-0.18-mRNA-1 228 KDTWSEEEDKVLIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 270
                                                    679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.201171226IPR017930Myb domain
SuperFamilySSF466894.93E-32173269IPR009057Homeodomain-like
SMARTSM007172.0E-15175224IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-28177230IPR009057Homeodomain-like
PfamPF139213.5E-19179237No hitNo description
CDDcd001675.98E-15179222No hitNo description
SMARTSM007176.1E-17227275IPR001005SANT/Myb domain
PROSITE profilePS5129421.873227277IPR017930Myb domain
CDDcd001671.75E-13230273No hitNo description
Gene3DG3DSA:1.10.10.602.1E-22231275IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MELDTKFREN LASQPILLSD NYLESYMKDD LSFEAPSSKG FLQDIHHLDQ FQINGSSSNP  60
IFGVQTQCTS TDFDIFECKP FMDNGGHGHV MDNFQSGGYL NLPQRNPIDI MGSDRSHMVF  120
TTCQDIIKPL NFVVPDEVSC ITAENGYYKK IGMNKNRAFP TTKKPQKVRK KSNVVKGQWT  180
VEEDRHLIQL VKQYGVRKWS YIAQMLPGRI GKQCRERWHN HLRPDIKKDT WSEEEDKVLI  240
QAHAEIGNKW AEIAKRLPGR TENSIKNHWN ATKRRQYSKR KCRSKYPRGS LLQEYIKGLN  300
LDPSNMVQNR RKTSSSNATA KNTTTKTPTQ LPQSTDQFCP NARLVPNYDF NEVPDFCFDE  360
NMFQESCSID SLLDDIPNNA PIMDENNFDD QMPCGPVVNE NMLHCAPVVV DENDFAMDIP  420
VDMTPVVDCD VKKELDLVEM MSQVNEAKCV NP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-471742762104C-Myb DNA-Binding Domain
1msf_C3e-471742762104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929442.10.0transcription factor MYB98-like
SwissprotQ9S7L21e-100MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A2N9HX410.0A0A2N9HX41_FAGSY; Uncharacterized protein
STRINGXP_008239795.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-100myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]