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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold05305-snap-gene-0.19-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
C2H2 |
Protein Properties |
Length: 526aa MW: 54931.4 Da PI: 8.3827 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold05305-snap-gene-0.19-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 66 | 88 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
maker-scaffold05305-snap-gene-0.19-mRNA-1 66 FVCEICNKGFQRDQNLQLHRRGH 88
89*******************88 PP
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2 | zf-C2H2 | 15.7 | 4.4e-05 | 142 | 164 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+k + +s+ k H++t+
maker-scaffold05305-snap-gene-0.19-mRNA-1 142 WKCERCSKKYAVQSDWKAHMKTC 164
58*******************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 526 aa
Download sequence Send
to blast |
MVELENSSPM AVSTASGEDG ISSAGCQTQN PPIPPLKKKR NLPGMPDPDA EVIALSPKTL 60 MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIRKRVYVCP EPSCVHHNPS 120 RALGDLTGIK KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTMFARR 180 DSFITHRAFC DALAEESARA RTLVISGSEG NVSANANANA NANVNVNVNG GVGVSVGVAS 240 PPQPPLTPAT TVVSPDLSIQ SSELPENPIG LSVSAATTAC LTTTAATTLS SSNSNTSVFA 300 SIFAPSTATT SFSNVMSALS SSDSPTATTT TTHPQLSTLE PTSLSLSSTS LFLSNNGTSS 360 LFPPQNQDHR HFIPVSPLPA MSATALLQKA AQMGAASSNA SLLRGFGLST SSSSVQDGTG 420 NATQWNGQVI KTESTDGLGL GLPSDMMMGH SSPFGSQPMT RDLLGLGIGG GNGGGGGNSG 480 NPTGGLSALL NSFAGGGFDV ASYGGGDHSS PNDTWDGAPK DKNPMS
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |