PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold05291-augustus-gene-0.16-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 43289 Da PI: 4.5916 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT +Ede+l+++++ G g+W++ ++ g+ R++k+c++rw +yl maker-scaffold05291-augustus-gene-0.16-mRNA-1 14 RGRWTSDEDEILIKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE+e +++++ +G++ W++Ia++++ gRt++++k++w+++l maker-scaffold05291-augustus-gene-0.16-mRNA-1 67 RGNISSEEEETIIKLHSSMGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.2E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.341 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.67E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.054 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-25 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.86E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MGRAPCCDKV GLKRGRWTSD EDEILIKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGNI SSEEEETIIK LHSSMGNRWS LIASHLPGRT DNEIKNYWNS HLSRRIPSFR 120 RSSSETLPMV MDSSKADIPP KRKGGRTSRW AMKKNKTYYI QKDVPKIKPK DSPLTPNIEE 180 VLLLPTPDLE QETFSSTTKD DSMVLDPKVN DNERESLALC SDEAWKCENQ RLYASGEKKT 240 ETLGPHDHDD QEGIDGGVFD DIVDNVLLDP DGVLALTKGR ESYDIIGFSD GNDSGFMSSD 300 KMVATEDLQE SGQFSSNGDS GEWYSCSSIT SGFDDGVERG NEIWDEKEKM LSSLWESDNW 360 EGDSYNLSEI DSDTHDAMVA WLLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-22 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023923549.1 | 0.0 | transcription factor MYB11-like | ||||
TrEMBL | A0A2N9J5I3 | 0.0 | A0A2N9J5I3_FAGSY; Uncharacterized protein | ||||
STRING | EOX95226 | 1e-128 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 5e-71 | myb domain protein 12 |