PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05291-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 384aa    MW: 43289 Da    PI: 4.5916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05291-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rgrWT +Ede+l+++++  G g+W++ ++  g+ R++k+c++rw +yl
  maker-scaffold05291-augustus-gene-0.16-mRNA-1 14 RGRWTSDEDEILIKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                                   8*******************************99************97 PP
2Myb_DNA-binding51.72e-1667112148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+ + eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++l
  maker-scaffold05291-augustus-gene-0.16-mRNA-1  67 RGNISSEEEETIIKLHSSMGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                                                    7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.341961IPR017930Myb domain
SuperFamilySSF466897.86E-2811108IPR009057Homeodomain-like
SMARTSM007177.2E-121363IPR001005SANT/Myb domain
PfamPF002492.8E-141461IPR001005SANT/Myb domain
CDDcd001671.67E-81661No hitNo description
PROSITE profilePS5129425.05462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2565115IPR009057Homeodomain-like
SMARTSM007172.3E-1666114IPR001005SANT/Myb domain
PfamPF002491.5E-1467112IPR001005SANT/Myb domain
CDDcd001677.86E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGRAPCCDKV GLKRGRWTSD EDEILIKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI SSEEEETIIK LHSSMGNRWS LIASHLPGRT DNEIKNYWNS HLSRRIPSFR  120
RSSSETLPMV MDSSKADIPP KRKGGRTSRW AMKKNKTYYI QKDVPKIKPK DSPLTPNIEE  180
VLLLPTPDLE QETFSSTTKD DSMVLDPKVN DNERESLALC SDEAWKCENQ RLYASGEKKT  240
ETLGPHDHDD QEGIDGGVFD DIVDNVLLDP DGVLALTKGR ESYDIIGFSD GNDSGFMSSD  300
KMVATEDLQE SGQFSSNGDS GEWYSCSSIT SGFDDGVERG NEIWDEKEKM LSSLWESDNW  360
EGDSYNLSEI DSDTHDAMVA WLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023923549.10.0transcription factor MYB11-like
TrEMBLA0A2N9J5I30.0A0A2N9J5I3_FAGSY; Uncharacterized protein
STRINGEOX952261e-128(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-71myb domain protein 12