PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05280-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 646aa    MW: 68379.8 Da    PI: 7.3158
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05280-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.33.5e-14165204242
                                            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                                                    ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  maker-scaffold05280-augustus-gene-0.16-mRNA-1 165 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 204
                                                    89**************************.********9875 PP
2TCR50.93.1e-16249288140
                                            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                                    k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  maker-scaffold05280-augustus-gene-0.16-mRNA-1 249 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCIDCKNFE 288
                                                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-16164204IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.811165289IPR005172CRC domain
PfamPF036384.6E-11166201IPR005172CRC domain
SMARTSM011143.5E-20249290IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.9E-13252287IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MGEGEGSDFP PKKAQSDGPA ACSSTTEAPA AKKLARQLDF TAFDSSGSAT VVLPEHPQTQ  60
TVTVTVAVAA QSQPPQVLVR PVVAPPPPPP PPPPSTTTTQ PLAQAPVSNS ASHPQMYLSE  120
IGVGIGFPFG SLKSNLGGGE IGTKPDSPKS RPKPNSEVKD GTPKKQKQCN CKHSRCLKLY  180
CECFASGIYC DGCNCVNCYN NVENEAARRE AVEATLERNP NAFRPKIASS PHGVRDSREE  240
AGEVLILGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK CIDCKNFEGS EERQALFHGD  300
QGNNMAYIQQ AANAAITGAI GSSGYASPPI SKKRKGQELF FTTAAKDPSA HRLGQFQQAN  360
HLKSSAPSSS LSSVPGVRVG GTAALGPSKF TYRSLLADII QPQDLKELCS VLVVLSGEAA  420
QTIAEQRSAT EKRAEDHTET SLASSTQERF PSQKEPNVEN AVADDCSSAN QNDKIGAEDS  480
SSDGADAPKG RPMSPGTLAL MCDEEDAVFM ASASPNGLMG NHNTSSPLPY GQGMTEVYAE  540
QEKIVLTKLR DCLNRLITFG EIKGKSELGV QKDLQSNVGV NANARIEVGN QQGPVSNGIA  600
KTVVPPTANK TSQMATPVVV APSNDLPKVP FLPKNGDTKP KNEKEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A5e-321572982132Protein lin-54 homolog
5fd3_B5e-321572982132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4840282e-92AM484028.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X101832.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924553.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2I4E6X80.0A0A2I4E6X8_JUGRE; protein tesmin/TSO1-like CXC 5
STRINGEOY307460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-179Tesmin/TSO1-like CXC domain-containing protein