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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold05139-augustus-gene-0.5-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
MYB |
Protein Properties |
Length: 237aa MW: 26518.2 Da PI: 9.3132 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold05139-augustus-gene-0.5-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.9 | 8.5e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+W+++Ed++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl
maker-scaffold05139-augustus-gene-0.5-mRNA-1 13 KGAWSKQEDQKLIDYIRIHGEGCWRSLPKAAGLDRCGKSCRLRWINYL 60
79********************************************97 PP
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2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
maker-scaffold05139-augustus-gene-0.5-mRNA-1 66 RGNFGQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
899*******************.*********.***********987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MRKPCCDKEG TNKGAWSKQE DQKLIDYIRI HGEGCWRSLP KAAGLDRCGK SCRLRWINYL 60 RPDIKRGNFG QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRRKLISMGI 120 DPNNHRLNQI PPIAFSQPKC VSPAATSSHE SMNNNESSKP LIKPFANTST ADRVSDTRSG 180 VEDEISGSLD LNLDLTIAGP SASSLTLVQE KLQINSKSIV TKEVTISEQV PTLVLFR
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |