PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold05091-snap-gene-0.18-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TALE | ||||||||
Protein Properties | Length: 380aa MW: 43058.4 Da PI: 6.5088 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.4 | 2.1e-07 | 330 | 362 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + maker-scaffold05091-snap-gene-0.18-mRNA-1 330 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 362 69*****************************87 PP | |||||||
2 | ELK | 29 | 2.4e-10 | 283 | 304 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ maker-scaffold05091-snap-gene-0.18-mRNA-1 283 ELKHELKQGYKEKIVDIREEIL 304 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.0E-18 | 119 | 163 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.3E-17 | 121 | 162 | IPR005540 | KNOX1 |
SMART | SM01256 | 5.8E-25 | 171 | 226 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.5E-19 | 177 | 225 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 283 | 304 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 283 | 303 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.6E-7 | 283 | 304 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.645 | 303 | 366 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-10 | 305 | 370 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-16 | 305 | 369 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.44E-11 | 306 | 367 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 310 | 367 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 323 | 362 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MAFHDHEMSF ESFTDHHHQH QHHHHHHQHQ QQQQRLSGAV VDVSSGGGGS GAPTWLSNAI 60 LRQQSSNNNN NNSSSSVLHD GNDDVHAGST NHRGGGGGDR NRTESEDCER EERWEWESAK 120 YKGDIVTHPL YEQLLSAHVA CLRIATPVDQ LPKIDAQLEQ SQRVVAKYSV LGNGAVDQKE 180 LDQFMTHYVL LLCSFKEQLQ QHVRGHAMEA VMACWELEQS LQSLTGVSPG EGTGATMSDD 240 DDDQADSDTN LYDGSLDGPD SMGFGPLIST ESERSLMERV RQELKHELKQ GYKEKIVDIR 300 EEILRKRRAG KLPGDTTSLL KSWWQSHAKW PYPTEEDKAR LVQETGLQLK QINNWFINQR 360 KRNWHTNPSS SNVLKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-12 | 306 | 370 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 359 | 379 | RKRNWHTNPSSSNVLKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023884797.1 | 0.0 | homeobox protein knotted-1-like 3 | ||||
Swissprot | P48000 | 1e-171 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2I4HBG5 | 0.0 | A0A2I4HBG5_JUGRE; homeobox protein knotted-1-like 3 isoform X2 | ||||
STRING | VIT_11s0118g00800.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-158 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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