PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05091-snap-gene-0.18-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 380aa    MW: 43058.4 Da    PI: 6.5088
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05091-snap-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.1e-073303622254
                                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                 +yp++e++++L +++gL+ +q+ +WF N+R +
  maker-scaffold05091-snap-gene-0.18-mRNA-1 330 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 362
                                                69*****************************87 PP

2ELK292.4e-10283304122
                                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                                ELKh+L+++Y+++++++++E++
  maker-scaffold05091-snap-gene-0.18-mRNA-1 283 ELKHELKQGYKEKIVDIREEIL 304
                                                9*******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-18119163IPR005540KNOX1
PfamPF037903.3E-17121162IPR005540KNOX1
SMARTSM012565.8E-25171226IPR005541KNOX2
PfamPF037914.5E-19177225IPR005541KNOX2
SMARTSM011886.1E-4283304IPR005539ELK domain
PROSITE profilePS512139.969283303IPR005539ELK domain
PfamPF037898.6E-7283304IPR005539ELK domain
PROSITE profilePS5007111.645303366IPR001356Homeobox domain
SMARTSM003892.6E-10305370IPR001356Homeobox domain
SuperFamilySSF466895.99E-16305369IPR009057Homeodomain-like
CDDcd000866.44E-11306367No hitNo description
Gene3DG3DSA:1.10.10.602.2E-24310367IPR009057Homeodomain-like
PfamPF059201.1E-17323362IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAFHDHEMSF ESFTDHHHQH QHHHHHHQHQ QQQQRLSGAV VDVSSGGGGS GAPTWLSNAI  60
LRQQSSNNNN NNSSSSVLHD GNDDVHAGST NHRGGGGGDR NRTESEDCER EERWEWESAK  120
YKGDIVTHPL YEQLLSAHVA CLRIATPVDQ LPKIDAQLEQ SQRVVAKYSV LGNGAVDQKE  180
LDQFMTHYVL LLCSFKEQLQ QHVRGHAMEA VMACWELEQS LQSLTGVSPG EGTGATMSDD  240
DDDQADSDTN LYDGSLDGPD SMGFGPLIST ESERSLMERV RQELKHELKQ GYKEKIVDIR  300
EEILRKRRAG KLPGDTTSLL KSWWQSHAKW PYPTEEDKAR LVQETGLQLK QINNWFINQR  360
KRNWHTNPSS SNVLKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12306370872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359379RKRNWHTNPSSSNVLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884797.10.0homeobox protein knotted-1-like 3
SwissprotP480001e-171KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2I4HBG50.0A0A2I4HBG5_JUGRE; homeobox protein knotted-1-like 3 isoform X2
STRINGVIT_11s0118g00800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-158KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]