PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold05038-snap-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 267aa    MW: 30135.7 Da    PI: 5.6489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold05038-snap-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.00019165187426
                                                HHHHHHHHHHHHHHHHHHHHHCT CS
                                        HLH   4 ahnerErrRRdriNsafeeLrel 26 
                                                +h+ +Er RR +iN+++  L+++
  maker-scaffold05038-snap-gene-0.15-mRNA-1 165 SHSLAERVRRGKINERLRCLQDI 187
                                                8***************9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.46E-5159210No hitNo description
SuperFamilySSF474592.36E-11159223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-9161216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.683161215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MAEFTADMQG FRSSFPVLDI DQNMDIINQY AGLNPSVLET SNLDFQCYNP FSNGNVFSHQ  60
APEFTANLAE TIPATFHEFN QNVMPEAQHI NVTAAGNEFH ESQKRKAMDM YESSSGTSSP  120
LVSEDVIKKK KNSGRGKRVK SNEKELENPK EVVHVRARRG QATDSHSLAE RVRRGKINER  180
LRCLQDISMG MAVMLDEIIN YVQSLQNQVE FLSMKLTAAS LFYDFNSETD ALETMQRAKA  240
NEAKELERLM RQGNGGLDSF HSNWSPL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin, ethylene and cytokinin, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023896384.10.0transcription factor BEE 1-like
SwissprotQ8GZ136e-55BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A2N9ERN61e-152A0A2N9ERN6_FAGSY; Uncharacterized protein
STRINGEMJ120561e-112(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.13e-57BR enhanced expression 1
Publications ? help Back to Top
  1. Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP
    Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation.
    New Phytol., 2016. 211(3): p. 912-25
    [PMID:27125220]