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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | maker-scaffold04972-snap-gene-0.10-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | GRAS | ||||||||
| Protein Properties | Length: 2211aa MW: 248817 Da PI: 4.8768 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 30 | 6.3e-10 | 392 | 437 | 1 | 46 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayft 46
l++lL+ cA+avs+gd + a++lL++++++++p gd qRla++f+
maker-scaffold04972-snap-gene-0.10-mRNA-1 392 LRSLLILCAQAVSTGDGRTANELLKQIRQHSTPFGDGSQRLAHFFA 437
6899****************************************97 PP
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| 2 | GRAS | 246.1 | 1.4e-75 | 439 | 698 | 116 | 373 |
GRAS 116 DfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
Df+i++G+QWp L+q L++Rpeg+p+lRiTg++ p++g +e +eetg+rL+k++++++vpfe+n++
maker-scaffold04972-snap-gene-0.10-mRNA-1 439 DFGIQYGFQWPLLIQFLSKRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLEKYCNRFKVPFEYNAI 506
9************************************9*99*************************** PP
GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
+++++e++++eeL+++++E+laVn+++++++llde+v+ +s+rd+vL+l+++++P++++ + + ++n
maker-scaffold04972-snap-gene-0.10-mRNA-1 507 ASQKWETIRIEELKIERNEVLAVNCAFRMKNLLDETVEGTSPRDAVLNLIRRMKPDIFINSIVNGSYN 574
999***************************************************************** PP
GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
++ Fl+rf eal ++sal+d +++++pr++ +r++ Ere+ gre++nv+a+eg er+er et+++ +
maker-scaffold04972-snap-gene-0.10-mRNA-1 575 TPFFLTRFREALFHFSALYDVFDVTIPRDNPQRVMFEREFYGREAMNVIANEGLERVERPETYKQSQF 642
******************************************************************** PP
GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
r+++aGFk++pl++ +++ ++ ++ + + + ++e+++++++gWk+r +++ S+W
maker-scaffold04972-snap-gene-0.10-mRNA-1 643 RISRAGFKQLPLNQGIMSLFRAKMKAWYHKDFILDEDNHWMLQGWKGRIVYASSCW 698
****************************888************************* PP
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| 3 | GRAS | 344.3 | 2e-105 | 1084 | 1456 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpp 66
l++lL+ cA+avs+gd + a++lL++++++++p gd qRla++f+++L+arla+ +++ ++
maker-scaffold04972-snap-gene-0.10-mRNA-1 1084 LRSLLILCAQAVSTGDGRTANELLKQVRQHSTPFGDGSQRLAHFFANGLEARLAG--TSVGTQMFY 1147
6899***************************************************..555555555 PP
GRAS 67 setseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132
++ + ++ e+l+a+++ ++P+ ++++ N++I a+e+e+++Hi+Df+i +G+QWp L+q L
maker-scaffold04972-snap-gene-0.10-mRNA-1 1148 TSHRLLSTLEKLKAYQVHLSAFPFKRIAYTFSNKMIFHAAEKETTLHIVDFGILYGFQWPLLIQFL 1213
555555699********************************************************* PP
GRAS 133 asRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
++Rpeg+p+lRiTg++ p++g +e +eetg+rL+ ++++++vpfe+n+++++++e++++eeL++
maker-scaffold04972-snap-gene-0.10-mRNA-1 1214 SKRPEGAPKLRITGIDLPQPGlrPAECIEETGRRLEMYCNRFNVPFEYNAIASQKWETIRIEELKI 1279
**********************99***************************999************ PP
GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
+++E+laVn+++++++llde+v+ +s+rd+vL+l+++++P++++ + + ++n++ Fl+rf eal
maker-scaffold04972-snap-gene-0.10-mRNA-1 1280 ERNEVLAVNCAFRMKNLLDETVEGTSPRDAVLNLIRRMKPDIFINSIVNGSYNAPFFLTRFREALF 1345
****************************************************************** PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
++sal+d +++++pr++ +r++ Ere+ gre++nv+a+eg er+er et+++ + r+++aGFk++p
maker-scaffold04972-snap-gene-0.10-mRNA-1 1346 HFSALYDVFDVTIPRDNPQRVMFEREFYGREAMNVIANEGLERVERPETYKQSQFRISRAGFKQLP 1411
****************************************************************** PP
GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
l++++++ k+ ++ + + + ++e+++++++gWk+r +++ S+W
maker-scaffold04972-snap-gene-0.10-mRNA-1 1412 LNQEIMSLFKAKMKAWYHKDFILDEDKHWMLQGWKGRIVYASSCW 1456
*****************888************************* PP
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| 4 | GRAS | 352.2 | 8.4e-108 | 1840 | 2208 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67
+ lL+ cA+avs+gd + a++lL++++++++p gd qR+a+yf+++L+arla+ +++ +++ +
maker-scaffold04972-snap-gene-0.10-mRNA-1 1840 RGLLILCAQAVSAGDGRTANELLKQIRQHSTPFGDGSQRVAHYFANGLEARLAG--TSIGSQMVYK 1903
679**************************************************9..8999999888 PP
GRAS 68 etseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa 133
+ s e+l+a+k++ ++P+ k+s+ ++Il a+e++++vHi+Df+i +G+QWp L+q+L+
maker-scaffold04972-snap-gene-0.10-mRNA-1 1904 RVS---ALEKLKAYKVYLSACPFKKMSYGFSIKMILLAAEKATTVHIVDFGIHYGFQWPLLIQKLS 1966
888...9*********************************************************** PP
GRAS 134 sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
+Rpeg+p+lRiTg++ p++g +e +eetg+rL++++++++vpfe+n+++++++e++++eeL+++
maker-scaffold04972-snap-gene-0.10-mRNA-1 1967 TRPEGAPKLRITGIDLPQPGfrPAECIEETGRRLERYCSRFNVPFEYNAIASQKWETIRIEELKIE 2032
*******************9*99***************************999************* PP
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
++E+laVn+++q+++llde+v+ +s+rd+vL+l+++++P+++v + + + n++ Fl rf eal +
maker-scaffold04972-snap-gene-0.10-mRNA-1 2033 RNEVLAVNCAFQMKNLLDETVEGTSPRDAVLNLIRRMKPDIFVNSIANGSFNAPFFLIRFREALFH 2098
****************************************************************** PP
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
+s ++d ++a++pr++ er ++Ere+ gr+++nv+aceg er+er et+++ + r+++aGFk++pl
maker-scaffold04972-snap-gene-0.10-mRNA-1 2099 FSGIYDVFDATIPRDNPERLMLEREFCGRDAMNVIACEGLERVERPETYKQSQVRISRAGFKKLPL 2164
****************************************************************** PP
GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++ ++ +++ ++ + + + ++e+s+++++gWk+r L++ S+W
maker-scaffold04972-snap-gene-0.10-mRNA-1 2165 NQELMSVIRAKIKAWYHKDFILDEDSDWMLQGWKGRILYASSCW 2208
****************888************************* PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 41.956 | 284 | 679 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.2E-7 | 392 | 437 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 4.8E-73 | 439 | 698 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 62.198 | 1058 | 1437 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 7.0E-103 | 1084 | 1456 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 63.021 | 1813 | 2189 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.9E-105 | 1840 | 2208 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2211 aa Download sequence Send to blast |
MSPNSEDQFS NLIDEYTFNQ LSPLPTTDLN FLEGPNLLSD VDLGPTSFEP SITTTDGPEG 60 QPYDPPHVVM PPTLQADSTT SPDDNDFSET VFKYMNQIIM EENIENKPCM FYDPLGLKDT 120 EKSFYDALGP KNPPLPNQNS LESPGLSSSS GDNGTNSTSS SSTVIDALWL SDLGEHNYQP 180 SLSPPPILGE YNAVQSNFNP TDQSQFFGNL SDDSVNHFGD GLAVMAQNIF TNSESILQFR 240 RGLEEASKFL PKSNNLVINL ESNTVSSSEW KKGEVLKVES LVVKGEKESD LSDGSRGRKN 300 HQREEIELEE GRSIKQTAVY VEESEETELS EMLDKVLLCT DAPPSLYGDN CEPLQNDASK 360 VSPQTKGQVQ GANGGKGSRN KKQGKKKETV DLRSLLILCA QAVSTGDGRT ANELLKQIRQ 420 HSTPFGDGSQ RLAHFFANDF GIQYGFQWPL LIQFLSKRPE GAPKLRITGI DLPQPGFRPA 480 ECIEETGRRL EKYCNRFKVP FEYNAIASQK WETIRIEELK IERNEVLAVN CAFRMKNLLD 540 ETVEGTSPRD AVLNLIRRMK PDIFINSIVN GSYNTPFFLT RFREALFHFS ALYDVFDVTI 600 PRDNPQRVMF EREFYGREAM NVIANEGLER VERPETYKQS QFRISRAGFK QLPLNQGIMS 660 LFRAKMKAWY HKDFILDEDN HWMLQGWKGR IVYASSCWVP DHFSNLINEY TFNQLSPPPT 720 TDLNLLESPN LSSDLDLGPT GFEPSITTTV GLEGQPYDPP HIIPPMLQAD FTSSPDDSDF 780 SETVLKYINQ ILMEENIENK PCMFYDPLGL KDTEKSFYDA LGQNYPPLPN LNSVDSPVFS 840 SSSCDYGTSS TSGSSTVNDS QGLSDLGEHN YRSSFSPPPI LGEYNAVQSN FNPTDQSQFF 900 GNLSDDSVNH FGDGLAVMAQ NFFTNSESIL QFRRGLEEAS KFLPKSNNLV IDLESNMVSS 960 SEWKGEDLKV ESLVVKGEKK SDSSDGSRGR KNHEREEIEF EEGRSNKQTA VYVEESEETE 1020 LSEMLDKVLL CTDAPPSLYG DNCEPFQNDA SKASSQTKGQ AQGANGGKGS RNKKQGKKKQ 1080 TVDLRSLLIL CAQAVSTGDG RTANELLKQV RQHSTPFGDG SQRLAHFFAN GLEARLAGTS 1140 VGTQMFYTSH RLLSTLEKLK AYQVHLSAFP FKRIAYTFSN KMIFHAAEKE TTLHIVDFGI 1200 LYGFQWPLLI QFLSKRPEGA PKLRITGIDL PQPGLRPAEC IEETGRRLEM YCNRFNVPFE 1260 YNAIASQKWE TIRIEELKIE RNEVLAVNCA FRMKNLLDET VEGTSPRDAV LNLIRRMKPD 1320 IFINSIVNGS YNAPFFLTRF REALFHFSAL YDVFDVTIPR DNPQRVMFER EFYGREAMNV 1380 IANEGLERVE RPETYKQSQF RISRAGFKQL PLNQEIMSLF KAKMKAWYHK DFILDEDKHW 1440 MLQGWKGRIV YASSCWVPDH FSNLINEYTF NQLSPLPTTD LNFLESPNLS SDLDLGPTGF 1500 EPSITTTVGL EGQPYDTPHI IPPMLQADFT SSPDDSDFSE TVLKYINQIL MEENIENKPC 1560 MFYDPLGLKD TEKSFYDALG QKNPPLPNQN CVESPALSTS SGDYGTNSTS SSSTVNDALW 1620 PSDLGEHNYR PSLSPPPILG EYNAVQSNFN PTDQSQVFGN LSDDSVSHFG DGLEVMAQNI 1680 FTSSESILQF RRGLEEASKF LPKSNNLVID LENNTVSSSE WKGEDLKVES LVVKGEKESD 1740 SLDGSRGRKN REREEIELEE GRSNKQTAVY VEEDELSDMF DKVLLCTDAP ASMCGENCEP 1800 LQNDASKASL HTIGQAQGAN GGKGSRNKKQ NKKKETVDLR GLLILCAQAV SAGDGRTANE 1860 LLKQIRQHST PFGDGSQRVA HYFANGLEAR LAGTSIGSQM VYKRVSALEK LKAYKVYLSA 1920 CPFKKMSYGF SIKMILLAAE KATTVHIVDF GIHYGFQWPL LIQKLSTRPE GAPKLRITGI 1980 DLPQPGFRPA ECIEETGRRL ERYCSRFNVP FEYNAIASQK WETIRIEELK IERNEVLAVN 2040 CAFQMKNLLD ETVEGTSPRD AVLNLIRRMK PDIFVNSIAN GSFNAPFFLI RFREALFHFS 2100 GIYDVFDATI PRDNPERLML EREFCGRDAM NVIACEGLER VERPETYKQS QVRISRAGFK 2160 KLPLNQELMS VIRAKIKAWY HKDFILDEDS DWMLQGWKGR ILYASSCWVP A |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 1e-43 | 381 | 2210 | 7 | 379 | Protein SCARECROW |
| 5b3h_D | 1e-43 | 381 | 2210 | 7 | 379 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | JN900480 | 0.0 | JN900480.1 Quercus robur scarecrow-like protein 1 mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023904339.1 | 0.0 | scarecrow-like protein 33 isoform X1 | ||||
| Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
| TrEMBL | A0A498IRE0 | 0.0 | A0A498IRE0_MALDO; Uncharacterized protein | ||||
| STRING | XP_008223833.1 | 0.0 | (Prunus mume) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF131 | 34 | 339 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G07530.1 | 0.0 | SCARECROW-like 14 | ||||
| Publications ? help Back to Top | |||
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