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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
maker-scaffold04870-augustus-gene-0.13-mRNA-1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family |
Trihelix |
Protein Properties |
Length: 328aa MW: 36918.1 Da PI: 5.237 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
maker-scaffold04870-augustus-gene-0.13-mRNA-1 | genome | THGP | View Nucleic Acid |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 75.5 | 8.9e-24 | 40 | 134 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwe 55
rWt++e+l Li++++ +e+ +r g+ + +p+W++vs+++++rg++r+p+qC+++w
maker-scaffold04870-augustus-gene-0.13-mRNA-1 40 RWTRDETLILIQGKKVIEDGVRGGRrststfgscQVEPKWDSVSSYCKQRGVKRGPVQCRKRWG 103
8**************9999999553333444444****************************** PP
trihelix 56 nlnkrykkikegekkrtsessstcpyfdqle 86
nl ++ykkik++e++ ++e++s + + ++++
maker-scaffold04870-augustus-gene-0.13-mRNA-1 104 NLLTDYKKIKRWESQIKEEAESFWMMRNDIR 134
****************999999999988875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MAPESNSLNE NADCPHVGLV KQEALIDSTD DGNKITRHPR WTRDETLILI QGKKVIEDGV 60 RGGRRSTSTF GSCQVEPKWD SVSSYCKQRG VKRGPVQCRK RWGNLLTDYK KIKRWESQIK 120 EEAESFWMMR NDIRREKKLA SFFDKEIYNA LDGMAFSAAT FPLPLVAVPA NENDSDGAKA 180 EVEEEDGDEE ETPVAVFDSH RHATAEDGLF SDFEHSEQEE SGCSPEYETV SGTVKGKQPG 240 SASMWRESIS QEERKRRRLS LDGQEDASNL GNQLVKVLKM NSNKLNAHLE AQNISCQLDR 300 DQRKEHTDSL VAALSKVTDA LVRIADKL
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 253 | 257 | RKRRR |
2 | 254 | 258 | KRRRL |